Hb_003502_090

Information

Type -
Description -
Location Contig3502: 96133-96918
Sequence    

Annotation

kegg
ID rcu:RCOM_0397710
description ATP synthase subunit d, putative (EC:3.6.3.14)
nr
ID XP_002532689.1
description ATP synthase subunit d, putative [Ricinus communis]
swissprot
ID Q9XGM1
description V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2
trembl
ID B9T370
description ATP synthase subunit d, putative OS=Ricinus communis GN=RCOM_0397710 PE=4 SV=1
Gene Ontology
ID GO:0000325
description v-type proton atpase subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36482: 95916-100633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003502_090 0.0 - - ATP synthase subunit d, putative [Ricinus communis]
2 Hb_003108_020 0.0602354854 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
3 Hb_000479_190 0.0654725602 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001234_100 0.077680345 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
5 Hb_001268_050 0.0780745596 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
6 Hb_003605_090 0.0798451108 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
7 Hb_154948_040 0.0802876194 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
8 Hb_001205_150 0.0805722004 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
9 Hb_000477_060 0.0813474694 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_007009_010 0.08186657 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
11 Hb_006618_120 0.0821002817 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
12 Hb_000692_220 0.0841458283 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
13 Hb_012799_160 0.0848319138 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
14 Hb_092337_010 0.0848453493 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
15 Hb_001159_130 0.0850362727 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
16 Hb_000002_380 0.0850639759 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
17 Hb_002375_070 0.0861397007 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001252_130 0.0861526111 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
19 Hb_004696_080 0.0880526085 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
20 Hb_005867_020 0.0882235722 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]

Gene co-expression network

sample Hb_003502_090 Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_003502_090--Hb_003108_020 Hb_000479_190 Hb_000479_190 Hb_003502_090--Hb_000479_190 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_001268_050 Hb_001268_050 Hb_003502_090--Hb_001268_050 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_003108_020--Hb_000479_190 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_000421_220 Hb_000421_220 Hb_001234_100--Hb_000421_220 Hb_025240_040 Hb_025240_040 Hb_001234_100--Hb_025240_040 Hb_003697_040 Hb_003697_040 Hb_001234_100--Hb_003697_040 Hb_001234_100--Hb_001205_150 Hb_001234_100--Hb_000479_190 Hb_003697_050 Hb_003697_050 Hb_001268_050--Hb_003697_050 Hb_000083_170 Hb_000083_170 Hb_001268_050--Hb_000083_170 Hb_001268_050--Hb_000479_190 Hb_021443_100 Hb_021443_100 Hb_001268_050--Hb_021443_100 Hb_000326_090 Hb_000326_090 Hb_001268_050--Hb_000326_090 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_004934_100 Hb_004934_100 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_154948_040--Hb_000002_380 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_000390_300 Hb_000390_300 Hb_154948_040--Hb_000390_300 Hb_002105_100 Hb_002105_100 Hb_154948_040--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.6236 24.9174 37.2078 102.357 55.1332 79.258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.367 103.705 87.8047 47.2606 44.8482

CAGE analysis