Hb_003504_010

Information

Type -
Description -
Location Contig3504: 11560-11853
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04290g
description hypothetical protein
nr
ID XP_006375849.1
description hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUP4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36486: 12216-16572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003504_010 0.0 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]
2 Hb_016120_020 0.0827513194 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
3 Hb_000856_250 0.1324708117 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_001610_060 0.1459508724 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
5 Hb_000897_010 0.1486617289 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
6 Hb_001775_060 0.1487720604 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001115_010 0.1565303175 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
8 Hb_186495_010 0.1648059737 - - Phosphoprotein phosphatase [Theobroma cacao]
9 Hb_000720_060 0.165313092 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
10 Hb_080068_010 0.1666420733 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
11 Hb_034688_030 0.1669208896 - - PREDICTED: uncharacterized protein LOC105642049 [Jatropha curcas]
12 Hb_000032_340 0.1680720191 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
13 Hb_007403_100 0.1689138832 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]
14 Hb_022597_010 0.1690257924 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
15 Hb_000203_150 0.1693845798 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
16 Hb_000069_150 0.1701039358 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
17 Hb_000705_050 0.1735267203 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
18 Hb_000616_100 0.1757122317 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_001322_010 0.1759801723 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
20 Hb_001013_060 0.1767114912 - - -

Gene co-expression network

sample Hb_003504_010 Hb_003504_010 Hb_016120_020 Hb_016120_020 Hb_003504_010--Hb_016120_020 Hb_000856_250 Hb_000856_250 Hb_003504_010--Hb_000856_250 Hb_001610_060 Hb_001610_060 Hb_003504_010--Hb_001610_060 Hb_000897_010 Hb_000897_010 Hb_003504_010--Hb_000897_010 Hb_001775_060 Hb_001775_060 Hb_003504_010--Hb_001775_060 Hb_001115_010 Hb_001115_010 Hb_003504_010--Hb_001115_010 Hb_016120_020--Hb_000856_250 Hb_016120_020--Hb_001610_060 Hb_016120_020--Hb_001115_010 Hb_002374_060 Hb_002374_060 Hb_016120_020--Hb_002374_060 Hb_000032_340 Hb_000032_340 Hb_016120_020--Hb_000032_340 Hb_000856_250--Hb_000032_340 Hb_000070_070 Hb_000070_070 Hb_000856_250--Hb_000070_070 Hb_010417_090 Hb_010417_090 Hb_000856_250--Hb_010417_090 Hb_000203_150 Hb_000203_150 Hb_000856_250--Hb_000203_150 Hb_002236_010 Hb_002236_010 Hb_000856_250--Hb_002236_010 Hb_001610_060--Hb_000203_150 Hb_001013_060 Hb_001013_060 Hb_001610_060--Hb_001013_060 Hb_000720_060 Hb_000720_060 Hb_001610_060--Hb_000720_060 Hb_001610_060--Hb_000032_340 Hb_001610_060--Hb_000856_250 Hb_007403_100 Hb_007403_100 Hb_000897_010--Hb_007403_100 Hb_000740_080 Hb_000740_080 Hb_000897_010--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000897_010--Hb_002768_040 Hb_000149_020 Hb_000149_020 Hb_000897_010--Hb_000149_020 Hb_000352_360 Hb_000352_360 Hb_000897_010--Hb_000352_360 Hb_002007_330 Hb_002007_330 Hb_000897_010--Hb_002007_330 Hb_034688_030 Hb_034688_030 Hb_001775_060--Hb_034688_030 Hb_002627_010 Hb_002627_010 Hb_001775_060--Hb_002627_010 Hb_000705_070 Hb_000705_070 Hb_001775_060--Hb_000705_070 Hb_003126_120 Hb_003126_120 Hb_001775_060--Hb_003126_120 Hb_002592_070 Hb_002592_070 Hb_001775_060--Hb_002592_070 Hb_003582_010 Hb_003582_010 Hb_001775_060--Hb_003582_010 Hb_004241_050 Hb_004241_050 Hb_001115_010--Hb_004241_050 Hb_128582_010 Hb_128582_010 Hb_001115_010--Hb_128582_010 Hb_080068_010 Hb_080068_010 Hb_001115_010--Hb_080068_010 Hb_002054_090 Hb_002054_090 Hb_001115_010--Hb_002054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.17479 0.728963 19.0251 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.310584 0.436913 4.62255 1.89539

CAGE analysis