Hb_003504_030

Information

Type -
Description -
Location Contig3504: 24537-33211
Sequence    

Annotation

kegg
ID rcu:RCOM_0608890
description serine/threonine protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012089318.1
description PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
swissprot
ID P48489
description Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2
trembl
ID B9S7J9
description Serine/threonine-protein phosphatase OS=Ricinus communis GN=RCOM_0608890 PE=3 SV=1
Gene Ontology
ID GO:0016787
description serine threonine-protein phosphatase pp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36488: 24774-33269 , PASA_asmbl_36489: 25294-25395 , PASA_asmbl_36490: 27116-27415 , PASA_asmbl_36491: 29212-29342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003504_030 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
2 Hb_000327_270 0.053256166 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
3 Hb_000037_190 0.0542401735 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
4 Hb_001799_180 0.0562234967 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
5 Hb_013399_100 0.0568209541 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002732_040 0.0627641447 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
7 Hb_001409_020 0.0637480913 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
8 Hb_000077_140 0.0660167796 - - structural constituent of cell wall, putative [Ricinus communis]
9 Hb_002843_120 0.0663264813 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
10 Hb_001004_060 0.0688225626 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_003680_120 0.0695251327 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
12 Hb_003168_110 0.069729816 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
13 Hb_000060_090 0.0699939392 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
14 Hb_000590_050 0.0700957223 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
15 Hb_000603_280 0.0704547582 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
16 Hb_000343_250 0.0723985736 - - PREDICTED: protein CASC3 [Jatropha curcas]
17 Hb_001198_100 0.0728714087 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
18 Hb_001329_140 0.0732079117 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
19 Hb_006915_030 0.0734934611 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
20 Hb_000363_240 0.0744406101 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_003504_030 Hb_003504_030 Hb_000327_270 Hb_000327_270 Hb_003504_030--Hb_000327_270 Hb_000037_190 Hb_000037_190 Hb_003504_030--Hb_000037_190 Hb_001799_180 Hb_001799_180 Hb_003504_030--Hb_001799_180 Hb_013399_100 Hb_013399_100 Hb_003504_030--Hb_013399_100 Hb_002732_040 Hb_002732_040 Hb_003504_030--Hb_002732_040 Hb_001409_020 Hb_001409_020 Hb_003504_030--Hb_001409_020 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003680_120 Hb_003680_120 Hb_000327_270--Hb_003680_120 Hb_000708_030 Hb_000708_030 Hb_000327_270--Hb_000708_030 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_000037_190--Hb_002732_040 Hb_000174_270 Hb_000174_270 Hb_000037_190--Hb_000174_270 Hb_001329_140 Hb_001329_140 Hb_000037_190--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000037_190--Hb_003168_110 Hb_000866_460 Hb_000866_460 Hb_000037_190--Hb_000866_460 Hb_001538_130 Hb_001538_130 Hb_001799_180--Hb_001538_130 Hb_001198_100 Hb_001198_100 Hb_001799_180--Hb_001198_100 Hb_002450_020 Hb_002450_020 Hb_001799_180--Hb_002450_020 Hb_006649_050 Hb_006649_050 Hb_001799_180--Hb_006649_050 Hb_065525_040 Hb_065525_040 Hb_001799_180--Hb_065525_040 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_013399_100--Hb_010618_010 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_002732_040--Hb_000866_460 Hb_001409_020--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_001409_020--Hb_001248_060 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8487 28.1239 16.8136 22.4448 21.3458 26.3961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4468 15.5224 28.585 17.8672 22.796

CAGE analysis