Hb_003504_050

Information

Type -
Description -
Location Contig3504: 65845-72772
Sequence    

Annotation

kegg
ID pop:POPTR_0019s039902
description hypothetical protein
nr
ID KDP23707.1
description hypothetical protein JCGZ_23540 [Jatropha curcas]
swissprot
ID F6M8H7
description Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1
trembl
ID A0A067JIN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23540 PE=4 SV=1
Gene Ontology
ID GO:0000287
description probable terpene synthase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003504_050 0.0 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
2 Hb_004772_010 0.0082470892 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_024446_010 0.0120395953 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_064445_030 0.0128913038 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_003828_010 0.0130882937 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
6 Hb_177166_010 0.0139968428 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_011206_030 0.014390914 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
8 Hb_048953_010 0.014390914 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
9 Hb_006094_010 0.0155261487 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_005781_010 0.0163095696 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
11 Hb_000485_060 0.0179859876 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
12 Hb_002478_050 0.0188968448 - - K(+)/H(+) antiporter, putative [Ricinus communis]
13 Hb_006267_050 0.0198401312 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
14 Hb_001595_060 0.020357969 - - hypothetical protein L484_001429 [Morus notabilis]
15 Hb_001844_010 0.0204408762 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
16 Hb_076836_010 0.0208396677 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
17 Hb_041813_020 0.0231186692 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
18 Hb_002325_080 0.03855133 - - -
19 Hb_008879_010 0.1385656563 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_003607_100 0.1453938022 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003504_050 Hb_003504_050 Hb_004772_010 Hb_004772_010 Hb_003504_050--Hb_004772_010 Hb_024446_010 Hb_024446_010 Hb_003504_050--Hb_024446_010 Hb_064445_030 Hb_064445_030 Hb_003504_050--Hb_064445_030 Hb_003828_010 Hb_003828_010 Hb_003504_050--Hb_003828_010 Hb_177166_010 Hb_177166_010 Hb_003504_050--Hb_177166_010 Hb_011206_030 Hb_011206_030 Hb_003504_050--Hb_011206_030 Hb_004772_010--Hb_011206_030 Hb_048953_010 Hb_048953_010 Hb_004772_010--Hb_048953_010 Hb_006267_050 Hb_006267_050 Hb_004772_010--Hb_006267_050 Hb_001595_060 Hb_001595_060 Hb_004772_010--Hb_001595_060 Hb_041813_020 Hb_041813_020 Hb_004772_010--Hb_041813_020 Hb_024446_010--Hb_064445_030 Hb_024446_010--Hb_003828_010 Hb_024446_010--Hb_177166_010 Hb_006094_010 Hb_006094_010 Hb_024446_010--Hb_006094_010 Hb_005781_010 Hb_005781_010 Hb_024446_010--Hb_005781_010 Hb_000485_060 Hb_000485_060 Hb_024446_010--Hb_000485_060 Hb_064445_030--Hb_003828_010 Hb_064445_030--Hb_177166_010 Hb_064445_030--Hb_006094_010 Hb_064445_030--Hb_005781_010 Hb_064445_030--Hb_000485_060 Hb_003828_010--Hb_177166_010 Hb_003828_010--Hb_006094_010 Hb_003828_010--Hb_005781_010 Hb_003828_010--Hb_000485_060 Hb_177166_010--Hb_006094_010 Hb_177166_010--Hb_005781_010 Hb_177166_010--Hb_000485_060 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_006267_050 Hb_011206_030--Hb_001595_060 Hb_011206_030--Hb_041813_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0987712 0 0 0 0.150583

CAGE analysis