Hb_003506_040

Information

Type -
Description -
Location Contig3506: 69104-72280
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G052500g
description hypothetical protein
nr
ID XP_007136524.1
description hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
swissprot
ID Q9STN8
description E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1
trembl
ID V7AV92
description E3 ubiquitin-protein ligase OS=Phaseolus vulgaris GN=PHAVU_009G052500g PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36505: 68924-72121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003506_040 0.0 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
2 Hb_006478_070 0.0714345589 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
3 Hb_001140_080 0.0805465638 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
4 Hb_001776_080 0.0862770587 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
5 Hb_012807_120 0.0972942016 - - metal ion binding protein, putative [Ricinus communis]
6 Hb_000300_540 0.0984289161 - - PREDICTED: syntaxin-132 [Jatropha curcas]
7 Hb_160818_010 0.1024346963 - - -
8 Hb_000365_350 0.1068377147 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
9 Hb_000088_180 0.1072472459 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
10 Hb_011316_030 0.1074166339 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
11 Hb_000491_080 0.1093687459 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
12 Hb_000270_450 0.1096873165 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
13 Hb_001009_050 0.1109063806 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
14 Hb_000320_440 0.1125917283 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
15 Hb_000176_140 0.11296524 - - PREDICTED: bystin [Jatropha curcas]
16 Hb_002149_040 0.1141343978 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003050_090 0.1142133398 - - lupus la ribonucleoprotein, putative [Ricinus communis]
18 Hb_000282_150 0.1158632309 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
19 Hb_000953_140 0.1161151535 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
20 Hb_003734_130 0.1161805387 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]

Gene co-expression network

sample Hb_003506_040 Hb_003506_040 Hb_006478_070 Hb_006478_070 Hb_003506_040--Hb_006478_070 Hb_001140_080 Hb_001140_080 Hb_003506_040--Hb_001140_080 Hb_001776_080 Hb_001776_080 Hb_003506_040--Hb_001776_080 Hb_012807_120 Hb_012807_120 Hb_003506_040--Hb_012807_120 Hb_000300_540 Hb_000300_540 Hb_003506_040--Hb_000300_540 Hb_160818_010 Hb_160818_010 Hb_003506_040--Hb_160818_010 Hb_006478_070--Hb_012807_120 Hb_006478_070--Hb_001140_080 Hb_000320_440 Hb_000320_440 Hb_006478_070--Hb_000320_440 Hb_000172_530 Hb_000172_530 Hb_006478_070--Hb_000172_530 Hb_001846_080 Hb_001846_080 Hb_006478_070--Hb_001846_080 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_001140_080--Hb_012807_120 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_000176_140 Hb_000176_140 Hb_001776_080--Hb_000176_140 Hb_001776_080--Hb_000320_440 Hb_001776_080--Hb_160818_010 Hb_002149_040 Hb_002149_040 Hb_001776_080--Hb_002149_040 Hb_000179_250 Hb_000179_250 Hb_001776_080--Hb_000179_250 Hb_011316_030 Hb_011316_030 Hb_001776_080--Hb_011316_030 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_007786_010 Hb_007786_010 Hb_000300_540--Hb_007786_010 Hb_004032_460 Hb_004032_460 Hb_000300_540--Hb_004032_460 Hb_000062_230 Hb_000062_230 Hb_000300_540--Hb_000062_230 Hb_002172_030 Hb_002172_030 Hb_000300_540--Hb_002172_030 Hb_000363_340 Hb_000363_340 Hb_000300_540--Hb_000363_340 Hb_000173_370 Hb_000173_370 Hb_000300_540--Hb_000173_370 Hb_000491_080 Hb_000491_080 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
264.433 27.8939 12.0644 19.5574 213.045 183.247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.7361 52.0386 65.2434 56.3244 6.80356

CAGE analysis