Hb_003507_020

Information

Type -
Description -
Location Contig3507: 28339-31541
Sequence    

Annotation

kegg
ID rcu:RCOM_1685860
description protein binding protein, putative
nr
ID XP_012081571.1
description PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067K142
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003507_020 0.0 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
2 Hb_043637_010 0.0939258534 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
3 Hb_000603_200 0.0947830953 - - PREDICTED: myosin-15 [Jatropha curcas]
4 Hb_001252_160 0.0948370259 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
5 Hb_003627_020 0.0953422554 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
6 Hb_000853_370 0.098850244 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
7 Hb_007810_040 0.1064035209 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
8 Hb_007178_010 0.1089421446 - - pseudo-hevein [Hevea brasiliensis]
9 Hb_012654_020 0.1115457127 - - conserved hypothetical protein [Ricinus communis]
10 Hb_050964_020 0.1130584303 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
11 Hb_001628_110 0.1136861085 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
12 Hb_002172_030 0.1188844517 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
13 Hb_000329_610 0.1201385757 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014067_010 0.1202173864 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
15 Hb_000483_370 0.1211115099 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002078_040 0.1211801423 - - protein with unknown function [Ricinus communis]
17 Hb_005730_020 0.1213107538 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
18 Hb_003304_080 0.1230386344 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
19 Hb_004126_010 0.1258457988 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
20 Hb_002232_180 0.1270128299 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003507_020 Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_003507_020--Hb_043637_010 Hb_000603_200 Hb_000603_200 Hb_003507_020--Hb_000603_200 Hb_001252_160 Hb_001252_160 Hb_003507_020--Hb_001252_160 Hb_003627_020 Hb_003627_020 Hb_003507_020--Hb_003627_020 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_043637_010--Hb_007810_040 Hb_043637_010--Hb_000603_200 Hb_003304_080 Hb_003304_080 Hb_043637_010--Hb_003304_080 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110 Hb_000483_370 Hb_000483_370 Hb_000603_200--Hb_000483_370 Hb_000603_200--Hb_001252_160 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_000603_200--Hb_007178_010 Hb_000061_410 Hb_000061_410 Hb_001252_160--Hb_000061_410 Hb_002835_190 Hb_002835_190 Hb_001252_160--Hb_002835_190 Hb_000329_620 Hb_000329_620 Hb_001252_160--Hb_000329_620 Hb_001252_160--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003627_020--Hb_004126_010 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030 Hb_000853_370--Hb_003627_020 Hb_014067_010 Hb_014067_010 Hb_000853_370--Hb_014067_010 Hb_050964_020 Hb_050964_020 Hb_000853_370--Hb_050964_020 Hb_000853_370--Hb_007178_010 Hb_154381_050 Hb_154381_050 Hb_000853_370--Hb_154381_050 Hb_007810_040--Hb_003304_080 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_002078_040 Hb_002078_040 Hb_007810_040--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_007810_040--Hb_095397_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2569 1.63516 0.160922 0.953286 24.4779 22.704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7278 10.7043 9.39213 0.489271 0.0522881

CAGE analysis