Hb_003513_010

Information

Type -
Description -
Location Contig3513: 18867-38304
Sequence    

Annotation

kegg
ID rcu:RCOM_1616980
description Structural maintenance of chromosome 1 protein, putative
nr
ID XP_002511931.1
description Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
swissprot
ID Q84WU4
description Golgin candidate 3 OS=Arabidopsis thaliana GN=GC3 PE=1 SV=1
trembl
ID B9RDZ2
description Structural maintenance of chromosome 1 protein, putative OS=Ricinus communis GN=RCOM_1616980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36519: 28758-38284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003513_010 0.0 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
2 Hb_004052_080 0.0461080948 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000137_040 0.0494706996 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_014834_150 0.0510103076 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000869_020 0.055793087 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
6 Hb_003861_060 0.0570852869 - - PREDICTED: treacle protein [Jatropha curcas]
7 Hb_007007_120 0.0592278554 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
8 Hb_002013_020 0.0599163503 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
9 Hb_004970_190 0.0616811072 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_005588_080 0.0638735694 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
11 Hb_003428_010 0.0659375191 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
12 Hb_002876_230 0.07109333 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
13 Hb_012395_230 0.071290693 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_000976_120 0.0717598465 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
15 Hb_003647_140 0.0721152943 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
16 Hb_001946_400 0.0738546106 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
17 Hb_003878_090 0.0753271202 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
18 Hb_000339_040 0.0765296519 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
19 Hb_000753_240 0.0779068969 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
20 Hb_002592_060 0.0781452674 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003513_010 Hb_003513_010 Hb_004052_080 Hb_004052_080 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003861_060 Hb_003861_060 Hb_003513_010--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_003513_010--Hb_007007_120 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_004052_080--Hb_003861_060 Hb_002013_020 Hb_002013_020 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_001322_110 Hb_001322_110 Hb_000137_040--Hb_001322_110 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260 Hb_014834_150--Hb_003861_060 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_014834_150--Hb_003428_010 Hb_014834_150--Hb_004052_080 Hb_004970_190 Hb_004970_190 Hb_000869_020--Hb_004970_190 Hb_000869_020--Hb_004052_080 Hb_000869_020--Hb_003861_060 Hb_000869_020--Hb_007007_120 Hb_005588_080 Hb_005588_080 Hb_000869_020--Hb_005588_080 Hb_003861_060--Hb_003428_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_007007_120--Hb_003428_010 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_000339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.80983 7.16887 14.5902 9.30857 8.32152 9.83291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2358 12.7624 9.28942 8.10216 12.7083

CAGE analysis