Hb_003517_020

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig3517: 42228-61679
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37340g
description POPTRDRAFT_798148; ABC transporter family protein
nr
ID XP_012070979.1
description PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
swissprot
ID Q9LK64
description ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1
trembl
ID B9GJX7
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0001s37340g PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36521: 50465-52555 , PASA_asmbl_36522: 49144-49627 , PASA_asmbl_36523: 40975-41399 , PASA_asmbl_36524: 34728-49628 , PASA_asmbl_36526: 45486-46145 , PASA_asmbl_36527: 60152-60362 , PASA_asmbl_36528: 32471-60725 , PASA_asmbl_36529: 41822-42042 , PASA_asmbl_36530: 42797-43799 , PASA_asmbl_36531: 32471-45426 , PASA_asmbl_36532: 60751-61311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_020 0.0 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
2 Hb_000313_370 0.1118315927 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_003576_050 0.1164197606 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
4 Hb_000928_040 0.1332978501 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000702_060 0.137917083 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007919_040 0.1458263909 - - PREDICTED: protein LYK5 [Jatropha curcas]
7 Hb_002524_030 0.1481256764 - - -
8 Hb_000227_040 0.1519616874 - - Stem-specific protein TSJT1, putative [Ricinus communis]
9 Hb_001322_180 0.1523764024 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_127886_010 0.1529576756 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_053575_020 0.1537968624 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
12 Hb_000362_110 0.1552742807 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
13 Hb_001780_150 0.1553385218 - - ceramidase, putative [Ricinus communis]
14 Hb_001946_150 0.1588815884 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011287_010 0.1638771497 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_000395_220 0.1650988861 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_000940_150 0.1666294737 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
18 Hb_011310_200 0.1681771048 - - grr1, plant, putative [Ricinus communis]
19 Hb_001625_010 0.1684085265 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
20 Hb_000347_110 0.1686346628 - - BnaA05g25330D [Brassica napus]

Gene co-expression network

sample Hb_003517_020 Hb_003517_020 Hb_000313_370 Hb_000313_370 Hb_003517_020--Hb_000313_370 Hb_003576_050 Hb_003576_050 Hb_003517_020--Hb_003576_050 Hb_000928_040 Hb_000928_040 Hb_003517_020--Hb_000928_040 Hb_000702_060 Hb_000702_060 Hb_003517_020--Hb_000702_060 Hb_007919_040 Hb_007919_040 Hb_003517_020--Hb_007919_040 Hb_002524_030 Hb_002524_030 Hb_003517_020--Hb_002524_030 Hb_000977_010 Hb_000977_010 Hb_000313_370--Hb_000977_010 Hb_000313_370--Hb_003576_050 Hb_002030_170 Hb_002030_170 Hb_000313_370--Hb_002030_170 Hb_001946_150 Hb_001946_150 Hb_000313_370--Hb_001946_150 Hb_000362_110 Hb_000362_110 Hb_000313_370--Hb_000362_110 Hb_009823_010 Hb_009823_010 Hb_003576_050--Hb_009823_010 Hb_001408_050 Hb_001408_050 Hb_003576_050--Hb_001408_050 Hb_001248_030 Hb_001248_030 Hb_003576_050--Hb_001248_030 Hb_003576_050--Hb_000928_040 Hb_000645_210 Hb_000645_210 Hb_000928_040--Hb_000645_210 Hb_000367_310 Hb_000367_310 Hb_000928_040--Hb_000367_310 Hb_000928_040--Hb_007919_040 Hb_000093_150 Hb_000093_150 Hb_000928_040--Hb_000093_150 Hb_000684_360 Hb_000684_360 Hb_000702_060--Hb_000684_360 Hb_053575_020 Hb_053575_020 Hb_000702_060--Hb_053575_020 Hb_000337_010 Hb_000337_010 Hb_000702_060--Hb_000337_010 Hb_000347_110 Hb_000347_110 Hb_000702_060--Hb_000347_110 Hb_001780_150 Hb_001780_150 Hb_000702_060--Hb_001780_150 Hb_005181_180 Hb_005181_180 Hb_000702_060--Hb_005181_180 Hb_007919_040--Hb_003576_050 Hb_000853_060 Hb_000853_060 Hb_007919_040--Hb_000853_060 Hb_007919_040--Hb_000367_310 Hb_002291_020 Hb_002291_020 Hb_007919_040--Hb_002291_020 Hb_000661_260 Hb_000661_260 Hb_002524_030--Hb_000661_260 Hb_000735_070 Hb_000735_070 Hb_002524_030--Hb_000735_070 Hb_007472_080 Hb_007472_080 Hb_002524_030--Hb_007472_080 Hb_002153_030 Hb_002153_030 Hb_002524_030--Hb_002153_030 Hb_001322_180 Hb_001322_180 Hb_002524_030--Hb_001322_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82626 10.8348 1.89257 5.59673 1.90826 2.27071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.790667 1.11357 2.32218 17.6986 4.50186

CAGE analysis