Hb_003517_070

Information

Type -
Description -
Location Contig3517: 89062-99103
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04950g
description POPTRDRAFT_820312; transport protein Sec24
nr
ID XP_012065222.1
description PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
swissprot
ID Q9SFU0
description Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=2 SV=2
trembl
ID A0A067L664
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20917 PE=4 SV=1
Gene Ontology
ID GO:0030127
description protein transport protein sec24-like at3g07100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36538: 88900-99068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_070 0.0 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
2 Hb_003340_010 0.0730150015 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
3 Hb_004917_010 0.0750898672 - - PREDICTED: U-box domain-containing protein 13-like [Jatropha curcas]
4 Hb_001975_150 0.0759258635 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
5 Hb_000392_160 0.0850889406 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
6 Hb_000803_320 0.0855946302 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
7 Hb_001080_300 0.0861819702 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
8 Hb_002611_010 0.0880553937 - - amino acid transporter, putative [Ricinus communis]
9 Hb_006059_010 0.0942642272 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
10 Hb_002025_030 0.0949859277 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
11 Hb_011537_060 0.0950690404 - - UPF0061 protein azo1574 [Morus notabilis]
12 Hb_002874_110 0.0950988929 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
13 Hb_000358_020 0.0955081769 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
14 Hb_000363_040 0.0956518837 - - Protein transport protein Sec24A, putative [Ricinus communis]
15 Hb_138585_080 0.0966083343 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
16 Hb_027445_020 0.0966617833 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
17 Hb_009296_080 0.0978540484 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
18 Hb_000484_010 0.0990579977 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
19 Hb_007416_210 0.0999337396 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
20 Hb_000535_050 0.1001112527 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]

Gene co-expression network

sample Hb_003517_070 Hb_003517_070 Hb_003340_010 Hb_003340_010 Hb_003517_070--Hb_003340_010 Hb_004917_010 Hb_004917_010 Hb_003517_070--Hb_004917_010 Hb_001975_150 Hb_001975_150 Hb_003517_070--Hb_001975_150 Hb_000392_160 Hb_000392_160 Hb_003517_070--Hb_000392_160 Hb_000803_320 Hb_000803_320 Hb_003517_070--Hb_000803_320 Hb_001080_300 Hb_001080_300 Hb_003517_070--Hb_001080_300 Hb_000890_070 Hb_000890_070 Hb_003340_010--Hb_000890_070 Hb_002874_110 Hb_002874_110 Hb_003340_010--Hb_002874_110 Hb_011537_060 Hb_011537_060 Hb_003340_010--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_003340_010--Hb_007933_040 Hb_000649_060 Hb_000649_060 Hb_003340_010--Hb_000649_060 Hb_000484_010 Hb_000484_010 Hb_004917_010--Hb_000484_010 Hb_004917_010--Hb_003340_010 Hb_002025_030 Hb_002025_030 Hb_004917_010--Hb_002025_030 Hb_023344_160 Hb_023344_160 Hb_004917_010--Hb_023344_160 Hb_004917_010--Hb_000392_160 Hb_001975_150--Hb_011537_060 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_000183_030 Hb_000183_030 Hb_000392_160--Hb_000183_030 Hb_000392_160--Hb_000484_010 Hb_000392_160--Hb_002025_030 Hb_000392_160--Hb_001975_150 Hb_000392_160--Hb_000803_320 Hb_000803_320--Hb_002874_110 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001080_300--Hb_001975_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73814 7.13143 5.84175 13.139 3.71102 3.80679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90162 4.91912 7.48803 11.2217 15.8944

CAGE analysis