Hb_003525_010

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig3525: 38415-44609
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11140g
description POPTRDRAFT_643943; hypothetical protein
nr
ID XP_011017000.1
description PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
swissprot
ID Q8GXL7
description GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2
trembl
ID A0A067L2M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15905 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 24-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36609: 38653-38760 , PASA_asmbl_36611: 40578-43120 , PASA_asmbl_36612: 43043-44443 , PASA_asmbl_36613: 43043-43726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003525_010 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
2 Hb_000092_170 0.0530855375 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
3 Hb_000085_160 0.0557178059 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
4 Hb_000334_280 0.0566137586 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
5 Hb_000225_040 0.057637674 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_003428_030 0.0583701661 - - tRNA, putative [Ricinus communis]
7 Hb_000215_110 0.0600316871 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
8 Hb_003878_070 0.0604437854 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
9 Hb_007691_030 0.0606786819 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_000011_200 0.0619586345 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
11 Hb_003125_120 0.0630522363 - - PREDICTED: TITAN-like protein [Jatropha curcas]
12 Hb_000757_060 0.0652902218 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
13 Hb_007575_050 0.0653088466 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
14 Hb_044728_010 0.0657377195 - - -
15 Hb_000317_240 0.0669511064 - - PREDICTED: protein DYAD [Jatropha curcas]
16 Hb_000227_080 0.0670383692 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004310_150 0.0674163827 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
18 Hb_000120_790 0.0682205643 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
19 Hb_000107_330 0.0684342864 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
20 Hb_000120_670 0.0685498743 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003525_010 Hb_003525_010 Hb_000092_170 Hb_000092_170 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_044728_010 Hb_044728_010 Hb_000092_170--Hb_044728_010 Hb_000107_330 Hb_000107_330 Hb_000092_170--Hb_000107_330 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_009767_110 Hb_009767_110 Hb_000092_170--Hb_009767_110 Hb_007317_110 Hb_007317_110 Hb_000085_160--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000085_160--Hb_000011_200 Hb_000630_050 Hb_000630_050 Hb_000085_160--Hb_000630_050 Hb_003665_060 Hb_003665_060 Hb_000085_160--Hb_003665_060 Hb_000010_330 Hb_000010_330 Hb_000085_160--Hb_000010_330 Hb_003125_120 Hb_003125_120 Hb_000334_280--Hb_003125_120 Hb_003878_070 Hb_003878_070 Hb_000334_280--Hb_003878_070 Hb_000403_050 Hb_000403_050 Hb_000334_280--Hb_000403_050 Hb_000484_030 Hb_000484_030 Hb_000334_280--Hb_000484_030 Hb_000334_280--Hb_000215_110 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.45627 6.86124 5.68617 7.29602 10.5657 12.3003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.96854 13.4944 8.58811 9.90817 6.89816

CAGE analysis