Hb_003525_020

Information

Type -
Description -
Location Contig3525: 65161-66605
Sequence    

Annotation

kegg
ID rcu:RCOM_0103630
description hypothetical protein
nr
ID XP_002533203.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T4N4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0103630 PE=4 SV=1
Gene Ontology
ID GO:0005768
description mediator of rna polymerase ii transcription subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36614: 65062-65857 , PASA_asmbl_36615: 66224-66481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003525_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000538_190 0.1192555509 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
3 Hb_048848_010 0.1382525527 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
4 Hb_001369_770 0.1558942102 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
5 Hb_001584_010 0.1600427322 - - kelch repeat protein, putative [Ricinus communis]
6 Hb_010261_010 0.1639445948 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
7 Hb_000362_090 0.1641091301 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
8 Hb_089100_040 0.1662108638 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
9 Hb_004976_060 0.1685741097 - - -
10 Hb_001544_080 0.170215707 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
11 Hb_020178_050 0.1765923023 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
12 Hb_011716_110 0.1771130491 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
13 Hb_004724_130 0.1813662728 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
14 Hb_007259_020 0.1817234433 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
15 Hb_009897_020 0.1837514184 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_009897_010 0.18558381 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_162074_010 0.1860779186 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
18 Hb_005203_020 0.1882775952 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
19 Hb_001351_040 0.1899651829 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
20 Hb_004976_040 0.1911360064 - - PREDICTED: protein HASTY 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003525_020 Hb_003525_020 Hb_000538_190 Hb_000538_190 Hb_003525_020--Hb_000538_190 Hb_048848_010 Hb_048848_010 Hb_003525_020--Hb_048848_010 Hb_001369_770 Hb_001369_770 Hb_003525_020--Hb_001369_770 Hb_001584_010 Hb_001584_010 Hb_003525_020--Hb_001584_010 Hb_010261_010 Hb_010261_010 Hb_003525_020--Hb_010261_010 Hb_000362_090 Hb_000362_090 Hb_003525_020--Hb_000362_090 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_002942_110 Hb_002942_110 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_048848_010--Hb_000362_090 Hb_001091_030 Hb_001091_030 Hb_048848_010--Hb_001091_030 Hb_010398_010 Hb_010398_010 Hb_048848_010--Hb_010398_010 Hb_048848_010--Hb_000538_190 Hb_001351_040 Hb_001351_040 Hb_048848_010--Hb_001351_040 Hb_001369_770--Hb_002942_110 Hb_000599_130 Hb_000599_130 Hb_001369_770--Hb_000599_130 Hb_001369_770--Hb_020178_050 Hb_004195_120 Hb_004195_120 Hb_001369_770--Hb_004195_120 Hb_005203_020 Hb_005203_020 Hb_001369_770--Hb_005203_020 Hb_000189_120 Hb_000189_120 Hb_001584_010--Hb_000189_120 Hb_008175_030 Hb_008175_030 Hb_001584_010--Hb_008175_030 Hb_003299_010 Hb_003299_010 Hb_001584_010--Hb_003299_010 Hb_000778_020 Hb_000778_020 Hb_001584_010--Hb_000778_020 Hb_000007_160 Hb_000007_160 Hb_001584_010--Hb_000007_160 Hb_003096_040 Hb_003096_040 Hb_010261_010--Hb_003096_040 Hb_003633_140 Hb_003633_140 Hb_010261_010--Hb_003633_140 Hb_012404_040 Hb_012404_040 Hb_010261_010--Hb_012404_040 Hb_010261_010--Hb_000538_190 Hb_001269_040 Hb_001269_040 Hb_010261_010--Hb_001269_040 Hb_009193_110 Hb_009193_110 Hb_000362_090--Hb_009193_110 Hb_004800_240 Hb_004800_240 Hb_000362_090--Hb_004800_240 Hb_001699_150 Hb_001699_150 Hb_000362_090--Hb_001699_150 Hb_000362_090--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000362_090--Hb_004162_120 Hb_148682_010 Hb_148682_010 Hb_000362_090--Hb_148682_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.78686 42.0674 6.66483 9.63826 7.02299 8.40735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09577 0.509263 0.505195 16.0162 1.6044

CAGE analysis