Hb_003527_020

Information

Type -
Description -
Location Contig3527: 47262-49189
Sequence    

Annotation

kegg
ID rcu:RCOM_1997950
description hypothetical protein
nr
ID CDY17591.1
description BnaC01g27150D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078FX59
description BnaC01g27150D protein OS=Brassica napus GN=BnaC01g27150D PE=4 SV=1
Gene Ontology
ID GO:0016020
description BnaC01g27150D

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36616: 46106-46768 , PASA_asmbl_36618: 48949-49060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003527_020 0.0 - - BnaC01g27150D [Brassica napus]
2 Hb_000959_050 0.1525733698 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
3 Hb_000060_130 0.1942090841 - - -
4 Hb_006043_030 0.2054901908 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_062503_010 0.2083774011 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_005183_060 0.2099804424 - - hypothetical protein JCGZ_04271 [Jatropha curcas]
7 Hb_045785_010 0.2151548256 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_090889_010 0.2154257204 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_000103_380 0.2167502829 - - PREDICTED: uncharacterized protein LOC104596624 [Nelumbo nucifera]
10 Hb_009434_060 0.2183648414 - - T4.15 [Malus x robusta]
11 Hb_101778_010 0.2197612182 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003106_250 0.2205874391 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
13 Hb_180214_010 0.2206787347 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
14 Hb_000832_360 0.2207124248 - - -
15 Hb_002876_010 0.2210578198 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
16 Hb_100332_020 0.2212655423 - - PREDICTED: uncharacterized protein LOC105168695 [Sesamum indicum]
17 Hb_005401_010 0.2215048793 - - -
18 Hb_117001_010 0.2236949968 - - -
19 Hb_000224_250 0.2251768695 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
20 Hb_007543_020 0.22592208 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003527_020 Hb_003527_020 Hb_000959_050 Hb_000959_050 Hb_003527_020--Hb_000959_050 Hb_000060_130 Hb_000060_130 Hb_003527_020--Hb_000060_130 Hb_006043_030 Hb_006043_030 Hb_003527_020--Hb_006043_030 Hb_062503_010 Hb_062503_010 Hb_003527_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_003527_020--Hb_005183_060 Hb_045785_010 Hb_045785_010 Hb_003527_020--Hb_045785_010 Hb_000959_050--Hb_000060_130 Hb_001247_260 Hb_001247_260 Hb_000959_050--Hb_001247_260 Hb_000636_010 Hb_000636_010 Hb_000959_050--Hb_000636_010 Hb_002154_080 Hb_002154_080 Hb_000959_050--Hb_002154_080 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_000060_130--Hb_007543_020 Hb_005092_090 Hb_005092_090 Hb_000060_130--Hb_005092_090 Hb_116784_020 Hb_116784_020 Hb_000060_130--Hb_116784_020 Hb_003302_010 Hb_003302_010 Hb_000060_130--Hb_003302_010 Hb_004899_210 Hb_004899_210 Hb_000060_130--Hb_004899_210 Hb_001366_260 Hb_001366_260 Hb_000060_130--Hb_001366_260 Hb_005401_010 Hb_005401_010 Hb_006043_030--Hb_005401_010 Hb_001205_170 Hb_001205_170 Hb_006043_030--Hb_001205_170 Hb_003106_250 Hb_003106_250 Hb_006043_030--Hb_003106_250 Hb_007507_030 Hb_007507_030 Hb_006043_030--Hb_007507_030 Hb_101778_010 Hb_101778_010 Hb_006043_030--Hb_101778_010 Hb_062503_010--Hb_005183_060 Hb_062503_010--Hb_101778_010 Hb_062503_010--Hb_007507_030 Hb_002876_010 Hb_002876_010 Hb_062503_010--Hb_002876_010 Hb_000103_380 Hb_000103_380 Hb_062503_010--Hb_000103_380 Hb_000224_250 Hb_000224_250 Hb_062503_010--Hb_000224_250 Hb_005183_060--Hb_101778_010 Hb_005183_060--Hb_000103_380 Hb_000832_360 Hb_000832_360 Hb_005183_060--Hb_000832_360 Hb_005183_060--Hb_007507_030 Hb_005183_060--Hb_002876_010 Hb_008642_050 Hb_008642_050 Hb_045785_010--Hb_008642_050 Hb_007575_020 Hb_007575_020 Hb_045785_010--Hb_007575_020 Hb_045785_010--Hb_004899_210 Hb_017640_010 Hb_017640_010 Hb_045785_010--Hb_017640_010 Hb_003169_040 Hb_003169_040 Hb_045785_010--Hb_003169_040 Hb_003900_040 Hb_003900_040 Hb_045785_010--Hb_003900_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.421035 0.224091 0 0.0402478 0.0355878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0595653 0.853585

CAGE analysis