Hb_003528_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig3528: 20877-27386
Sequence    

Annotation

kegg
ID rcu:RCOM_0802980
description myb, putative
nr
ID XP_012077444.1
description PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
swissprot
ID Q9S7G7
description Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1
trembl
ID A0A067KR01
description MYB family protein OS=Jatropha curcas GN=JCGZ_07780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 3r-1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36623: 25709-26132 , PASA_asmbl_36624: 20111-27426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003528_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
2 Hb_032920_060 0.0610101827 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
3 Hb_000185_070 0.075255231 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003549_150 0.07599212 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
5 Hb_010381_090 0.0824819686 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
6 Hb_006588_200 0.0829886078 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
7 Hb_000205_300 0.084899964 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
8 Hb_004310_020 0.0850989335 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
9 Hb_007813_040 0.0851788259 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
10 Hb_027428_010 0.0864871957 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
11 Hb_000603_150 0.0868252631 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
12 Hb_002197_020 0.087859225 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
13 Hb_001780_020 0.089079621 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002872_030 0.0897941787 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
15 Hb_001408_040 0.0904776444 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
16 Hb_004046_050 0.0919460105 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
17 Hb_007416_300 0.0927634159 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
18 Hb_003185_010 0.0928740878 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
19 Hb_172632_120 0.0943150634 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000300_500 0.0952309233 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]

Gene co-expression network

sample Hb_003528_010 Hb_003528_010 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_000185_070 Hb_000185_070 Hb_003528_010--Hb_000185_070 Hb_003549_150 Hb_003549_150 Hb_003528_010--Hb_003549_150 Hb_010381_090 Hb_010381_090 Hb_003528_010--Hb_010381_090 Hb_006588_200 Hb_006588_200 Hb_003528_010--Hb_006588_200 Hb_000205_300 Hb_000205_300 Hb_003528_010--Hb_000205_300 Hb_005337_090 Hb_005337_090 Hb_032920_060--Hb_005337_090 Hb_027428_010 Hb_027428_010 Hb_032920_060--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_032920_060--Hb_073973_130 Hb_002192_080 Hb_002192_080 Hb_032920_060--Hb_002192_080 Hb_012389_020 Hb_012389_020 Hb_032920_060--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_000185_070--Hb_027428_010 Hb_000185_070--Hb_005337_090 Hb_001981_030 Hb_001981_030 Hb_000185_070--Hb_001981_030 Hb_002872_030 Hb_002872_030 Hb_000185_070--Hb_002872_030 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_010381_090--Hb_007416_300 Hb_010381_090--Hb_002872_030 Hb_008453_140 Hb_008453_140 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_003185_010 Hb_003185_010 Hb_006588_200--Hb_003185_010 Hb_001780_020 Hb_001780_020 Hb_006588_200--Hb_001780_020 Hb_006588_200--Hb_003549_150 Hb_034552_030 Hb_034552_030 Hb_006588_200--Hb_034552_030 Hb_003994_230 Hb_003994_230 Hb_006588_200--Hb_003994_230 Hb_000205_300--Hb_000603_150 Hb_004310_020 Hb_004310_020 Hb_000205_300--Hb_004310_020 Hb_158062_010 Hb_158062_010 Hb_000205_300--Hb_158062_010 Hb_000120_670 Hb_000120_670 Hb_000205_300--Hb_000120_670 Hb_003693_070 Hb_003693_070 Hb_000205_300--Hb_003693_070 Hb_010712_030 Hb_010712_030 Hb_000205_300--Hb_010712_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1673 13.7282 17.9638 17.1076 15.924 18.7656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.734 15.8726 18.3589 14.5601 4.29753

CAGE analysis