Hb_003528_030

Information

Type -
Description -
Location Contig3528: 44837-49778
Sequence    

Annotation

kegg
ID tcc:TCM_037154
description RNA polymerase I-associated factor PAF67 isoform 1
nr
ID XP_012077435.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
swissprot
ID A7SDW5
description Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1
trembl
ID A0A067KPM2
description Eukaryotic translation initiation factor 3 subunit L OS=Jatropha curcas GN=JCGZ_07776 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit l-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36625: 44838-49703 , PASA_asmbl_36626: 49041-49324 , PASA_asmbl_36627: 46607-46883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003528_030 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
2 Hb_007481_010 0.048814254 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
3 Hb_000352_300 0.0580126803 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
4 Hb_003683_020 0.0603713308 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_012498_010 0.062736526 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
6 Hb_000477_050 0.0653616191 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
7 Hb_004990_010 0.066114683 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
8 Hb_013399_020 0.0694868335 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
9 Hb_002989_020 0.0697576285 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
10 Hb_011628_060 0.0721680242 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
11 Hb_008616_050 0.0735799702 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
12 Hb_002728_080 0.0736306457 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_003994_230 0.0742614595 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
14 Hb_001500_140 0.0748324978 - - pelota, putative [Ricinus communis]
15 Hb_000046_500 0.0764764767 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
16 Hb_006002_040 0.0766225387 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
17 Hb_001009_320 0.0789098588 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
18 Hb_001269_330 0.0789553171 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_001434_080 0.0790092013 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
20 Hb_000720_040 0.0792692653 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003528_030 Hb_003528_030 Hb_007481_010 Hb_007481_010 Hb_003528_030--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_003528_030--Hb_000352_300 Hb_003683_020 Hb_003683_020 Hb_003528_030--Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_000477_100 Hb_000477_100 Hb_007481_010--Hb_000477_100 Hb_000046_500 Hb_000046_500 Hb_007481_010--Hb_000046_500 Hb_000184_070 Hb_000184_070 Hb_000352_300--Hb_000184_070 Hb_000352_300--Hb_000477_100 Hb_000352_300--Hb_000046_500 Hb_000352_300--Hb_003683_020 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_012498_010--Hb_010142_020 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000120_280 Hb_000120_280 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_000260_350 Hb_000260_350 Hb_004990_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_004990_010--Hb_093458_040 Hb_004990_010--Hb_002989_020 Hb_000487_270 Hb_000487_270 Hb_004990_010--Hb_000487_270 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2515 21.1551 33.5716 49.7451 28.5111 32.3962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3733 29.3459 27.4125 40.972 25.6737

CAGE analysis