Hb_003528_060

Information

Type -
Description -
Location Contig3528: 140662-142851
Sequence    

Annotation

kegg
ID tcc:TCM_037158
description hypothetical protein
nr
ID XP_012077431.1
description PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07772 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36631: 140672-142700 , PASA_asmbl_36633: 141659-141904
cDNA
(Sanger)
(ID:Location)		 021_O07.ab1: 140672-142700

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003528_060 0.0 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
2 Hb_012573_070 0.059151829 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001538_120 0.0639981832 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
4 Hb_003927_140 0.0694621779 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
5 Hb_013405_090 0.0755292239 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
6 Hb_182305_020 0.0769204506 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
7 Hb_001818_020 0.0776200516 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
8 Hb_000012_220 0.0789886007 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000926_300 0.0814800222 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
10 Hb_000000_170 0.0819573913 - - defender against cell death, putative [Ricinus communis]
11 Hb_000545_150 0.0822657902 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
12 Hb_010261_060 0.08398606 - - unnamed protein product [Coffea canephora]
13 Hb_002518_050 0.0848882992 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
14 Hb_012753_230 0.0887075983 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_000487_250 0.0902731409 - - 60S ribosomal protein L27e, putative [Ricinus communis]
16 Hb_175215_010 0.0907016435 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
17 Hb_002259_070 0.0910664027 - - taz protein, putative [Ricinus communis]
18 Hb_128048_010 0.0915654676 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
19 Hb_003050_080 0.0923698539 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_000057_070 0.0931622516 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]

Gene co-expression network

sample Hb_003528_060 Hb_003528_060 Hb_012573_070 Hb_012573_070 Hb_003528_060--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_013405_090 Hb_013405_090 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_001818_020 Hb_001818_020 Hb_003528_060--Hb_001818_020 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_001538_120--Hb_000545_150 Hb_001538_120--Hb_012573_070 Hb_001538_120--Hb_001818_020 Hb_001538_120--Hb_013405_090 Hb_000630_060 Hb_000630_060 Hb_003927_140--Hb_000630_060 Hb_003927_140--Hb_001818_020 Hb_002716_090 Hb_002716_090 Hb_003927_140--Hb_002716_090 Hb_003927_140--Hb_012573_070 Hb_003927_140--Hb_001538_120 Hb_005322_040 Hb_005322_040 Hb_013405_090--Hb_005322_040 Hb_000012_220 Hb_000012_220 Hb_013405_090--Hb_000012_220 Hb_010261_060 Hb_010261_060 Hb_013405_090--Hb_010261_060 Hb_129924_010 Hb_129924_010 Hb_013405_090--Hb_129924_010 Hb_182305_020--Hb_012573_070 Hb_000000_170 Hb_000000_170 Hb_182305_020--Hb_000000_170 Hb_182305_020--Hb_000545_150 Hb_000510_110 Hb_000510_110 Hb_182305_020--Hb_000510_110 Hb_012022_120 Hb_012022_120 Hb_182305_020--Hb_012022_120 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9047 4.09172 10.246 8.30792 17.4767 17.5662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2235 42.6502 11.2448 7.61344 4.75594

CAGE analysis