Hb_003528_090

Information

Type -
Description -
Location Contig3528: 179577-179939
Sequence    

Annotation

kegg
ID tcc:TCM_037169
description hypothetical protein
nr
ID XP_007012098.1
description Uncharacterized protein TCM_037169 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GKQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_037169 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003528_090 0.0 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
2 Hb_003060_020 0.0381999 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_001157_120 0.0628469364 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
4 Hb_000816_090 0.0639292655 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
5 Hb_001401_130 0.0646715192 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
6 Hb_005396_020 0.0671072166 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
7 Hb_000327_350 0.0714913858 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
8 Hb_103468_010 0.0726668798 - - protein binding protein, putative [Ricinus communis]
9 Hb_001634_050 0.077696105 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
10 Hb_000243_240 0.0801555178 - - cytochrome P450 family protein [Populus trichocarpa]
11 Hb_012180_070 0.0807657818 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000107_240 0.0823110501 - - organic anion transporter, putative [Ricinus communis]
13 Hb_000429_070 0.0837459516 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
14 Hb_006570_170 0.0858781275 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
15 Hb_000012_340 0.0867372545 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
16 Hb_006249_010 0.0916494235 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
17 Hb_000521_030 0.0925210969 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
18 Hb_000244_290 0.0946019236 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
19 Hb_000868_020 0.0948302783 - - -
20 Hb_006889_010 0.0959048327 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003528_090 Hb_003528_090 Hb_003060_020 Hb_003060_020 Hb_003528_090--Hb_003060_020 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_000816_090 Hb_000816_090 Hb_003528_090--Hb_000816_090 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_005396_020 Hb_005396_020 Hb_003528_090--Hb_005396_020 Hb_000327_350 Hb_000327_350 Hb_003528_090--Hb_000327_350 Hb_003060_020--Hb_000816_090 Hb_003060_020--Hb_000327_350 Hb_003060_020--Hb_005396_020 Hb_103468_010 Hb_103468_010 Hb_003060_020--Hb_103468_010 Hb_001634_050 Hb_001634_050 Hb_003060_020--Hb_001634_050 Hb_000243_240 Hb_000243_240 Hb_001157_120--Hb_000243_240 Hb_001157_120--Hb_003060_020 Hb_000816_170 Hb_000816_170 Hb_001157_120--Hb_000816_170 Hb_001157_120--Hb_005396_020 Hb_000244_290 Hb_000244_290 Hb_001157_120--Hb_000244_290 Hb_000816_090--Hb_000327_350 Hb_006570_170 Hb_006570_170 Hb_000816_090--Hb_006570_170 Hb_000816_090--Hb_005396_020 Hb_000816_090--Hb_001634_050 Hb_000429_070 Hb_000429_070 Hb_001401_130--Hb_000429_070 Hb_001386_070 Hb_001386_070 Hb_001401_130--Hb_001386_070 Hb_012180_070 Hb_012180_070 Hb_001401_130--Hb_012180_070 Hb_002186_190 Hb_002186_190 Hb_001401_130--Hb_002186_190 Hb_000012_340 Hb_000012_340 Hb_001401_130--Hb_000012_340 Hb_005396_020--Hb_001634_050 Hb_005396_020--Hb_012180_070 Hb_005396_020--Hb_006570_170 Hb_000521_030 Hb_000521_030 Hb_000327_350--Hb_000521_030 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000327_350--Hb_000244_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0904882 0.168679 6.70813 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0833583 0.644585

CAGE analysis