Hb_003529_010

Information

Type -
Description -
Location Contig3529: 28869-34627
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03400g
description hypothetical protein
nr
ID XP_012066651.1
description PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
swissprot
ID Q9XGM3
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID A0A067L5B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00225 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_010 0.0 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
2 Hb_001675_260 0.065397207 - - nitrate transporter, putative [Ricinus communis]
3 Hb_004007_190 0.0856053704 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
4 Hb_001318_180 0.0859173286 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
5 Hb_000021_010 0.1005697049 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000604_050 0.1030337054 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
7 Hb_002783_210 0.1063871114 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
8 Hb_027402_110 0.1143690203 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
9 Hb_017549_010 0.1202150031 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
10 Hb_004157_060 0.1214084756 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
11 Hb_008566_070 0.1231513956 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003012_010 0.1263544164 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003906_150 0.1306250367 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
14 Hb_002548_010 0.1361535108 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
15 Hb_000769_050 0.1402739301 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
16 Hb_003939_090 0.1409066691 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_001766_140 0.1417301769 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
18 Hb_123887_010 0.1418528438 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
19 Hb_002025_120 0.1422702683 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
20 Hb_000270_530 0.1425945556 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]

Gene co-expression network

sample Hb_003529_010 Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_003529_010--Hb_001675_260 Hb_004007_190 Hb_004007_190 Hb_003529_010--Hb_004007_190 Hb_001318_180 Hb_001318_180 Hb_003529_010--Hb_001318_180 Hb_000021_010 Hb_000021_010 Hb_003529_010--Hb_000021_010 Hb_000604_050 Hb_000604_050 Hb_003529_010--Hb_000604_050 Hb_002783_210 Hb_002783_210 Hb_003529_010--Hb_002783_210 Hb_001675_260--Hb_001318_180 Hb_027402_110 Hb_027402_110 Hb_001675_260--Hb_027402_110 Hb_001675_260--Hb_004007_190 Hb_004157_060 Hb_004157_060 Hb_001675_260--Hb_004157_060 Hb_001675_260--Hb_000604_050 Hb_004007_190--Hb_001318_180 Hb_002025_120 Hb_002025_120 Hb_004007_190--Hb_002025_120 Hb_004007_190--Hb_000021_010 Hb_004007_190--Hb_000604_050 Hb_001318_180--Hb_000021_010 Hb_003906_150 Hb_003906_150 Hb_001318_180--Hb_003906_150 Hb_001318_180--Hb_027402_110 Hb_000021_010--Hb_004157_060 Hb_000021_010--Hb_001675_260 Hb_000021_010--Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_103149_010 Hb_103149_010 Hb_000604_050--Hb_103149_010 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_002783_210--Hb_001675_260 Hb_002783_210--Hb_000604_050 Hb_002783_210--Hb_008566_070 Hb_017549_010 Hb_017549_010 Hb_002783_210--Hb_017549_010 Hb_005643_080 Hb_005643_080 Hb_002783_210--Hb_005643_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0309491 3.1674 0.8553 5.64473 0.0233296 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.160116 0.140488

CAGE analysis