Hb_003529_130

Information

Type -
Description -
Location Contig3529: 131942-138998
Sequence    

Annotation

kegg
ID rcu:RCOM_1374490
description ribosome biogenesis protein bop1, putative
nr
ID XP_012066645.1
description PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
swissprot
ID A8ID74
description Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2
trembl
ID A0A067L5A8
description Ribosome biogenesis protein BOP1 homolog OS=Jatropha curcas GN=JCGZ_00215 PE=3 SV=1
Gene Ontology
ID GO:0005515
description ribosome biogenesis protein bop1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36644: 132055-138899 , PASA_asmbl_36645: 137386-138798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_130 0.0 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
2 Hb_000021_020 0.0811769057 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
3 Hb_000120_620 0.0863890716 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
4 Hb_003029_130 0.0876836529 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
5 Hb_080147_040 0.0906784156 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
6 Hb_011609_170 0.0918754673 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
7 Hb_001508_020 0.0945203773 - - myosin vIII, putative [Ricinus communis]
8 Hb_009620_030 0.0966107233 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP59 [Jatropha curcas]
9 Hb_003097_180 0.0975054911 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
10 Hb_005260_040 0.0977538261 - - PREDICTED: uncharacterized protein LOC105633768 isoform X1 [Jatropha curcas]
11 Hb_001178_150 0.0982256708 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
12 Hb_011930_080 0.1003929543 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
13 Hb_017895_020 0.1005220217 - - Vacuolar protein sorting protein, putative [Ricinus communis]
14 Hb_015099_010 0.1013192921 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
15 Hb_000363_380 0.1013916325 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
16 Hb_000139_230 0.104421582 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
17 Hb_008725_130 0.1050408897 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
18 Hb_002066_080 0.1051945372 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
19 Hb_001900_120 0.1052015002 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
20 Hb_002392_030 0.1057784179 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]

Gene co-expression network

sample Hb_003529_130 Hb_003529_130 Hb_000021_020 Hb_000021_020 Hb_003529_130--Hb_000021_020 Hb_000120_620 Hb_000120_620 Hb_003529_130--Hb_000120_620 Hb_003029_130 Hb_003029_130 Hb_003529_130--Hb_003029_130 Hb_080147_040 Hb_080147_040 Hb_003529_130--Hb_080147_040 Hb_011609_170 Hb_011609_170 Hb_003529_130--Hb_011609_170 Hb_001508_020 Hb_001508_020 Hb_003529_130--Hb_001508_020 Hb_000021_020--Hb_011609_170 Hb_002307_350 Hb_002307_350 Hb_000021_020--Hb_002307_350 Hb_006915_020 Hb_006915_020 Hb_000021_020--Hb_006915_020 Hb_005408_020 Hb_005408_020 Hb_000021_020--Hb_005408_020 Hb_008725_130 Hb_008725_130 Hb_000021_020--Hb_008725_130 Hb_004899_070 Hb_004899_070 Hb_000120_620--Hb_004899_070 Hb_004970_160 Hb_004970_160 Hb_000120_620--Hb_004970_160 Hb_000098_130 Hb_000098_130 Hb_000120_620--Hb_000098_130 Hb_003097_180 Hb_003097_180 Hb_000120_620--Hb_003097_180 Hb_000261_290 Hb_000261_290 Hb_000120_620--Hb_000261_290 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_000487_220 Hb_000487_220 Hb_003029_130--Hb_000487_220 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_001473_090 Hb_001473_090 Hb_003029_130--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_003029_130--Hb_000935_090 Hb_003029_130--Hb_001178_150 Hb_010925_020 Hb_010925_020 Hb_003029_130--Hb_010925_020 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_009620_030 Hb_009620_030 Hb_080147_040--Hb_009620_030 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_005188_060 Hb_005188_060 Hb_080147_040--Hb_005188_060 Hb_140049_020 Hb_140049_020 Hb_080147_040--Hb_140049_020 Hb_011609_170--Hb_008725_130 Hb_011609_170--Hb_005408_020 Hb_002942_050 Hb_002942_050 Hb_011609_170--Hb_002942_050 Hb_000868_060 Hb_000868_060 Hb_011609_170--Hb_000868_060 Hb_001050_010 Hb_001050_010 Hb_011609_170--Hb_001050_010 Hb_001163_120 Hb_001163_120 Hb_011609_170--Hb_001163_120 Hb_001508_020--Hb_010925_020 Hb_001369_350 Hb_001369_350 Hb_001508_020--Hb_001369_350 Hb_001508_020--Hb_000021_020 Hb_003894_040 Hb_003894_040 Hb_001508_020--Hb_003894_040 Hb_018202_050 Hb_018202_050 Hb_001508_020--Hb_018202_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4438 16.9519 16.5186 9.00277 21.2748 28.2226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40222 3.70859 5.59627 13.3008 9.3313

CAGE analysis