Hb_003529_170

Information

Type -
Description -
Location Contig3529: 146835-175098
Sequence    

Annotation

kegg
ID rcu:RCOM_1374260
description ATP-dependent RNA helicase, putative
nr
ID XP_012066649.1
description PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
swissprot
ID A3KMI0
description ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1
trembl
ID A0A067L1X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00219 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dhx29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36647: 147399-149511 , PASA_asmbl_36648: 150564-152013 , PASA_asmbl_36649: 152251-160317 , PASA_asmbl_36650: 152884-156439 , PASA_asmbl_36651: 161543-165557 , PASA_asmbl_36652: 165563-165773 , PASA_asmbl_36654: 169348-169679 , PASA_asmbl_36655: 170187-171269 , PASA_asmbl_36656: 171659-171761 , PASA_asmbl_36657: 173574-174578 , PASA_asmbl_36658: 175093-175376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_170 0.0 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
2 Hb_006198_120 0.0633598182 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
3 Hb_005271_190 0.0764650379 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_002641_030 0.0795706681 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
5 Hb_000538_160 0.0806798512 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
6 Hb_001266_100 0.082270263 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
7 Hb_001614_060 0.083043703 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
8 Hb_000920_300 0.0850175951 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
9 Hb_003913_070 0.0855257541 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
10 Hb_004327_040 0.0857435145 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
11 Hb_000181_320 0.087985502 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
12 Hb_002477_090 0.0888397989 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
13 Hb_011537_050 0.091176343 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
14 Hb_003734_010 0.0919562306 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
15 Hb_016734_060 0.0972356463 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
16 Hb_000462_170 0.09968653 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006520_040 0.100082615 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
18 Hb_001080_230 0.1014039617 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
19 Hb_009079_030 0.1035566783 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
20 Hb_004954_070 0.1047314338 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]

Gene co-expression network

sample Hb_003529_170 Hb_003529_170 Hb_006198_120 Hb_006198_120 Hb_003529_170--Hb_006198_120 Hb_005271_190 Hb_005271_190 Hb_003529_170--Hb_005271_190 Hb_002641_030 Hb_002641_030 Hb_003529_170--Hb_002641_030 Hb_000538_160 Hb_000538_160 Hb_003529_170--Hb_000538_160 Hb_001266_100 Hb_001266_100 Hb_003529_170--Hb_001266_100 Hb_001614_060 Hb_001614_060 Hb_003529_170--Hb_001614_060 Hb_009079_030 Hb_009079_030 Hb_006198_120--Hb_009079_030 Hb_006198_120--Hb_000538_160 Hb_003913_070 Hb_003913_070 Hb_006198_120--Hb_003913_070 Hb_006198_120--Hb_005271_190 Hb_009486_180 Hb_009486_180 Hb_006198_120--Hb_009486_180 Hb_005271_190--Hb_000538_160 Hb_001655_060 Hb_001655_060 Hb_005271_190--Hb_001655_060 Hb_004954_070 Hb_004954_070 Hb_005271_190--Hb_004954_070 Hb_001062_010 Hb_001062_010 Hb_005271_190--Hb_001062_010 Hb_000920_300 Hb_000920_300 Hb_002641_030--Hb_000920_300 Hb_002374_010 Hb_002374_010 Hb_002641_030--Hb_002374_010 Hb_011537_050 Hb_011537_050 Hb_002641_030--Hb_011537_050 Hb_001723_020 Hb_001723_020 Hb_002641_030--Hb_001723_020 Hb_033642_090 Hb_033642_090 Hb_002641_030--Hb_033642_090 Hb_000441_120 Hb_000441_120 Hb_000538_160--Hb_000441_120 Hb_000792_010 Hb_000792_010 Hb_000538_160--Hb_000792_010 Hb_001008_120 Hb_001008_120 Hb_000538_160--Hb_001008_120 Hb_000181_320 Hb_000181_320 Hb_001266_100--Hb_000181_320 Hb_003370_030 Hb_003370_030 Hb_001266_100--Hb_003370_030 Hb_001266_100--Hb_001614_060 Hb_001114_140 Hb_001114_140 Hb_001266_100--Hb_001114_140 Hb_001329_160 Hb_001329_160 Hb_001266_100--Hb_001329_160 Hb_000003_190 Hb_000003_190 Hb_001266_100--Hb_000003_190 Hb_010712_050 Hb_010712_050 Hb_001614_060--Hb_010712_050 Hb_003768_050 Hb_003768_050 Hb_001614_060--Hb_003768_050 Hb_001080_230 Hb_001080_230 Hb_001614_060--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_001614_060--Hb_003030_060 Hb_000025_280 Hb_000025_280 Hb_001614_060--Hb_000025_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.77351 5.4041 2.26442 2.27617 3.37654 4.48581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.36335 4.07956 1.79926 6.41204 4.73423

CAGE analysis