Hb_003529_230

Information

Type transcription factor
Description TF Family: ERF
Location Contig3529: 236205-239728
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor toe2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36661: 236649-236975 , PASA_asmbl_36662: 237269-239295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_230 0.0 transcription factor TF Family: ERF -
2 Hb_052434_010 0.1132186632 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
3 Hb_025236_020 0.122330724 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
4 Hb_000771_070 0.1248565021 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
5 Hb_000402_030 0.1280943553 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
6 Hb_000752_020 0.1307575312 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
7 Hb_005814_010 0.1330952423 - - ATP binding protein, putative [Ricinus communis]
8 Hb_003680_250 0.1368999368 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_007416_170 0.1382882679 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
10 Hb_000027_130 0.1465810803 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
11 Hb_001538_050 0.1476606001 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
12 Hb_002343_020 0.1489988138 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
13 Hb_003077_060 0.1512742245 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
14 Hb_000092_080 0.1524936053 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
15 Hb_154466_010 0.1548201857 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
16 Hb_012018_020 0.157083743 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
17 Hb_002615_010 0.1573534173 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
18 Hb_006970_150 0.1595431474 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
19 Hb_012098_180 0.1598778063 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
20 Hb_004880_100 0.160012018 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]

Gene co-expression network

sample Hb_003529_230 Hb_003529_230 Hb_052434_010 Hb_052434_010 Hb_003529_230--Hb_052434_010 Hb_025236_020 Hb_025236_020 Hb_003529_230--Hb_025236_020 Hb_000771_070 Hb_000771_070 Hb_003529_230--Hb_000771_070 Hb_000402_030 Hb_000402_030 Hb_003529_230--Hb_000402_030 Hb_000752_020 Hb_000752_020 Hb_003529_230--Hb_000752_020 Hb_005814_010 Hb_005814_010 Hb_003529_230--Hb_005814_010 Hb_052434_010--Hb_005814_010 Hb_052434_010--Hb_025236_020 Hb_000359_260 Hb_000359_260 Hb_052434_010--Hb_000359_260 Hb_000001_010 Hb_000001_010 Hb_052434_010--Hb_000001_010 Hb_002107_110 Hb_002107_110 Hb_052434_010--Hb_002107_110 Hb_002343_020 Hb_002343_020 Hb_025236_020--Hb_002343_020 Hb_000421_020 Hb_000421_020 Hb_025236_020--Hb_000421_020 Hb_025236_020--Hb_005814_010 Hb_025236_020--Hb_000771_070 Hb_000027_130 Hb_000027_130 Hb_000771_070--Hb_000027_130 Hb_000771_070--Hb_000752_020 Hb_000771_070--Hb_005814_010 Hb_000771_070--Hb_000402_030 Hb_000402_030--Hb_002343_020 Hb_005375_070 Hb_005375_070 Hb_000402_030--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_000402_030--Hb_001898_010 Hb_000402_030--Hb_005814_010 Hb_149484_010 Hb_149484_010 Hb_000402_030--Hb_149484_010 Hb_007574_050 Hb_007574_050 Hb_000402_030--Hb_007574_050 Hb_000752_020--Hb_000027_130 Hb_000473_080 Hb_000473_080 Hb_000752_020--Hb_000473_080 Hb_000252_080 Hb_000252_080 Hb_000752_020--Hb_000252_080 Hb_000752_020--Hb_005814_010 Hb_000495_050 Hb_000495_050 Hb_005814_010--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_005814_010--Hb_000031_160 Hb_000552_090 Hb_000552_090 Hb_005814_010--Hb_000552_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235928 12.1922 6.44198 2.10952 0.25707 0.165812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0530439 0.0496977 3.61342 1.60444

CAGE analysis