Hb_003529_240

Information

Type transcription factor
Description TF Family: AP2
Location Contig3529: 241296-244537
Sequence    

Annotation

kegg
ID gmx:100796271
description ethylene-responsive transcription factor RAP2-7-like
nr
ID XP_012447125.1
description PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
swissprot
ID P47927
description Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1
trembl
ID A0A0D2TMQ0
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G104200 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor rap2-7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36663: 241462-241997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_240 0.0 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
2 Hb_033053_020 0.1277466948 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
3 Hb_007749_020 0.1280725236 - - receptor-kinase, putative [Ricinus communis]
4 Hb_000563_630 0.1359060235 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
5 Hb_002235_370 0.1386854908 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
6 Hb_001675_310 0.1394474383 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
7 Hb_004659_100 0.1412486705 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002999_080 0.1419351653 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
9 Hb_008021_040 0.1492271954 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
10 Hb_139461_010 0.1494417788 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
11 Hb_000210_160 0.1509627289 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_087427_010 0.1514577722 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
13 Hb_001048_070 0.1542583932 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
14 Hb_002539_050 0.1556690805 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
15 Hb_001675_290 0.1559075136 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
16 Hb_024868_010 0.1605663106 - - protein kinase, putative [Ricinus communis]
17 Hb_155444_010 0.1611742999 - - -
18 Hb_029142_040 0.1621180013 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
19 Hb_034507_090 0.1633648524 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
20 Hb_003849_200 0.1655364895 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_003529_240 Hb_003529_240 Hb_033053_020 Hb_033053_020 Hb_003529_240--Hb_033053_020 Hb_007749_020 Hb_007749_020 Hb_003529_240--Hb_007749_020 Hb_000563_630 Hb_000563_630 Hb_003529_240--Hb_000563_630 Hb_002235_370 Hb_002235_370 Hb_003529_240--Hb_002235_370 Hb_001675_310 Hb_001675_310 Hb_003529_240--Hb_001675_310 Hb_004659_100 Hb_004659_100 Hb_003529_240--Hb_004659_100 Hb_033053_020--Hb_004659_100 Hb_087427_010 Hb_087427_010 Hb_033053_020--Hb_087427_010 Hb_004631_100 Hb_004631_100 Hb_033053_020--Hb_004631_100 Hb_000631_100 Hb_000631_100 Hb_033053_020--Hb_000631_100 Hb_038718_010 Hb_038718_010 Hb_033053_020--Hb_038718_010 Hb_008021_040 Hb_008021_040 Hb_033053_020--Hb_008021_040 Hb_001675_290 Hb_001675_290 Hb_007749_020--Hb_001675_290 Hb_036029_020 Hb_036029_020 Hb_007749_020--Hb_036029_020 Hb_000172_230 Hb_000172_230 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002272_200 Hb_002272_200 Hb_007749_020--Hb_002272_200 Hb_034507_090 Hb_034507_090 Hb_000563_630--Hb_034507_090 Hb_000210_160 Hb_000210_160 Hb_000563_630--Hb_000210_160 Hb_000742_130 Hb_000742_130 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_010315_100 Hb_010315_100 Hb_002235_370--Hb_010315_100 Hb_004678_030 Hb_004678_030 Hb_002235_370--Hb_004678_030 Hb_164926_050 Hb_164926_050 Hb_002235_370--Hb_164926_050 Hb_002686_210 Hb_002686_210 Hb_002235_370--Hb_002686_210 Hb_002539_050 Hb_002539_050 Hb_002235_370--Hb_002539_050 Hb_001675_310--Hb_000210_160 Hb_001675_310--Hb_003849_200 Hb_001675_310--Hb_000563_630 Hb_002233_080 Hb_002233_080 Hb_001675_310--Hb_002233_080 Hb_000666_120 Hb_000666_120 Hb_001675_310--Hb_000666_120 Hb_003435_040 Hb_003435_040 Hb_001675_310--Hb_003435_040 Hb_009627_020 Hb_009627_020 Hb_004659_100--Hb_009627_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_024868_010 Hb_024868_010 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050 Hb_009838_120 Hb_009838_120 Hb_004659_100--Hb_009838_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0285912 0.286712 0.271952 0.651614 0.0143249 0.0125398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0325793 0 0 0.163775 0.107072

CAGE analysis