Hb_003531_040

Information

Type transcription factor
Description TF Family: HB
Location Contig3531: 45443-46657
Sequence    

Annotation

kegg
ID rcu:RCOM_1368840
description homeobox protein, putative
nr
ID XP_002515621.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID P46897
description Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2
trembl
ID B9RPF2
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_1368840 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36665: 45438-46788 , PASA_asmbl_36666: 45812-46028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003531_040 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_003913_030 0.136268172 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
3 Hb_006916_200 0.1383832238 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
4 Hb_020967_010 0.1547717971 - - -
5 Hb_005714_100 0.1749435801 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
6 Hb_011689_100 0.1780934073 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
7 Hb_002875_070 0.1783791377 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
8 Hb_000336_190 0.1790424405 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
9 Hb_001956_190 0.1860891091 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
10 Hb_000117_060 0.1872614772 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
11 Hb_001863_270 0.1888220023 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
12 Hb_002122_030 0.1888252181 - - -
13 Hb_001511_190 0.1922471213 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
14 Hb_001133_010 0.1923107464 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001472_140 0.1931547231 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
16 Hb_009421_050 0.1960492158 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
17 Hb_000003_760 0.1975358914 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
18 Hb_000009_200 0.1998607366 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
19 Hb_008112_010 0.2013481517 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
20 Hb_000029_410 0.2019045077 - - AT14A, putative [Ricinus communis]

Gene co-expression network

sample Hb_003531_040 Hb_003531_040 Hb_003913_030 Hb_003913_030 Hb_003531_040--Hb_003913_030 Hb_006916_200 Hb_006916_200 Hb_003531_040--Hb_006916_200 Hb_020967_010 Hb_020967_010 Hb_003531_040--Hb_020967_010 Hb_005714_100 Hb_005714_100 Hb_003531_040--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_003531_040--Hb_011689_100 Hb_002875_070 Hb_002875_070 Hb_003531_040--Hb_002875_070 Hb_000220_090 Hb_000220_090 Hb_003913_030--Hb_000220_090 Hb_003913_030--Hb_006916_200 Hb_000117_060 Hb_000117_060 Hb_003913_030--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_003913_030--Hb_056012_010 Hb_003637_020 Hb_003637_020 Hb_003913_030--Hb_003637_020 Hb_000008_110 Hb_000008_110 Hb_006916_200--Hb_000008_110 Hb_000345_500 Hb_000345_500 Hb_006916_200--Hb_000345_500 Hb_006916_200--Hb_000220_090 Hb_001511_190 Hb_001511_190 Hb_006916_200--Hb_001511_190 Hb_053519_010 Hb_053519_010 Hb_020967_010--Hb_053519_010 Hb_000336_190 Hb_000336_190 Hb_020967_010--Hb_000336_190 Hb_001472_140 Hb_001472_140 Hb_020967_010--Hb_001472_140 Hb_000003_760 Hb_000003_760 Hb_020967_010--Hb_000003_760 Hb_105660_010 Hb_105660_010 Hb_020967_010--Hb_105660_010 Hb_000009_200 Hb_000009_200 Hb_005714_100--Hb_000009_200 Hb_000035_050 Hb_000035_050 Hb_005714_100--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_005714_100--Hb_008112_010 Hb_005714_100--Hb_002875_070 Hb_056196_060 Hb_056196_060 Hb_005714_100--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_002122_030 Hb_002122_030 Hb_011689_100--Hb_002122_030 Hb_012787_040 Hb_012787_040 Hb_011689_100--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_011689_100--Hb_001053_200 Hb_000610_060 Hb_000610_060 Hb_011689_100--Hb_000610_060 Hb_000803_060 Hb_000803_060 Hb_011689_100--Hb_000803_060 Hb_002233_070 Hb_002233_070 Hb_011689_100--Hb_002233_070 Hb_002875_070--Hb_000035_050 Hb_002759_260 Hb_002759_260 Hb_002875_070--Hb_002759_260 Hb_003849_190 Hb_003849_190 Hb_002875_070--Hb_003849_190 Hb_001133_010 Hb_001133_010 Hb_002875_070--Hb_001133_010 Hb_002875_070--Hb_000009_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1537 113.068 35.817 80.9378 2.45954 5.81004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3748 3.56824 8.05744 9.23658 5.65497

CAGE analysis