Hb_003531_050

Information

Type -
Description -
Location Contig3531: 57292-60683
Sequence    

Annotation

kegg
ID pop:POPTR_0015s00930g
description POPTRDRAFT_250752; hypothetical protein
nr
ID XP_012072700.1
description PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
swissprot
ID Q56Y42
description Pyridoxal reductase, chloroplastic OS=Arabidopsis thaliana GN=PLR1 PE=1 SV=1
trembl
ID A0A067KNS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06433 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pyridoxal chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36667: 57402-60883
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003531_050 0.0 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
2 Hb_001352_030 0.06173567 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
3 Hb_001606_010 0.0853844166 - - kinase, putative [Ricinus communis]
4 Hb_001301_260 0.0893071154 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_002890_160 0.0893123397 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
6 Hb_000265_170 0.0924623278 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
7 Hb_000302_360 0.0926267263 - - beta-carotene hydroxylase, putative [Ricinus communis]
8 Hb_010534_040 0.0958428496 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
9 Hb_002053_180 0.0983244548 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_000645_260 0.0999086269 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
11 Hb_005486_020 0.101268085 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
12 Hb_015934_060 0.106525047 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
13 Hb_111997_010 0.1096167273 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
14 Hb_132356_010 0.1098535972 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_001377_120 0.1107670452 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
16 Hb_000836_090 0.1120285472 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
17 Hb_000185_170 0.1124826964 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000486_020 0.1132313341 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
19 Hb_044653_050 0.1137731513 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
20 Hb_000243_290 0.1148138894 - - plastidic aldolase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003531_050 Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_003531_050--Hb_001352_030 Hb_001606_010 Hb_001606_010 Hb_003531_050--Hb_001606_010 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_002890_160 Hb_002890_160 Hb_003531_050--Hb_002890_160 Hb_000265_170 Hb_000265_170 Hb_003531_050--Hb_000265_170 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_001606_010 Hb_010534_040 Hb_010534_040 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_001352_030--Hb_002890_160 Hb_001926_070 Hb_001926_070 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_001301_260--Hb_001606_010 Hb_001301_260--Hb_001352_030 Hb_044653_050 Hb_044653_050 Hb_001301_260--Hb_044653_050 Hb_001629_120 Hb_001629_120 Hb_001301_260--Hb_001629_120 Hb_132356_010 Hb_132356_010 Hb_001301_260--Hb_132356_010 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_003337_020 Hb_003337_020 Hb_000265_170--Hb_003337_020 Hb_000185_170 Hb_000185_170 Hb_000265_170--Hb_000185_170 Hb_111997_010 Hb_111997_010 Hb_000265_170--Hb_111997_010 Hb_000265_170--Hb_001606_010 Hb_000302_360--Hb_010534_040 Hb_001269_060 Hb_001269_060 Hb_000302_360--Hb_001269_060 Hb_000645_260 Hb_000645_260 Hb_000302_360--Hb_000645_260 Hb_000302_360--Hb_001606_010 Hb_014720_140 Hb_014720_140 Hb_000302_360--Hb_014720_140 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244819 13.498 44.9116 20.6313 0.0166713 0.063656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.607342 0.149301 0.66842 4.72015 27.2109

CAGE analysis