Hb_003531_060

Information

Type -
Description -
Location Contig3531: 77430-79544
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDP20879.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068VIM0
description Coffea canephora DH200=94 genomic scaffold, scaffold_1353 OS=Coffea canephora GN=GSCOC_T00003021001 PE=4 SV=1
Gene Ontology
ID GO:0017057
description probable 6-phosphogluconolactonase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36670: 77400-80010 , PASA_asmbl_36671: 77445-85755 , PASA_asmbl_36673: 78011-78224
cDNA
(Sanger)
(ID:Location)		 013_C08.ab1: 77400-79939 , 017_J10.ab1: 77371-85339 , 029_F09.ab1: 77371-85271 , 034_J21.ab1: 77371-85330

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003531_060 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_005321_020 0.0657797953 - - splicing factor-related family protein [Populus trichocarpa]
3 Hb_006831_110 0.0706109407 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
4 Hb_000283_070 0.0717427282 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
5 Hb_000107_500 0.0721710118 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
6 Hb_011030_010 0.0754889149 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
7 Hb_033187_050 0.0773406533 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
8 Hb_002235_160 0.0816881405 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
9 Hb_000563_640 0.0849571711 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
10 Hb_000071_030 0.0851238581 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
11 Hb_000645_120 0.0888458366 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
12 Hb_000915_050 0.0888917369 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002131_020 0.0895365865 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
14 Hb_001930_010 0.089737128 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
15 Hb_002255_050 0.0912875216 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000922_370 0.0914041667 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
17 Hb_009620_050 0.0919337692 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
18 Hb_147737_010 0.0920888141 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
19 Hb_001700_040 0.0922895702 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
20 Hb_000088_130 0.0929014241 - - hypothetical protein JCGZ_02447 [Jatropha curcas]

Gene co-expression network

sample Hb_003531_060 Hb_003531_060 Hb_005321_020 Hb_005321_020 Hb_003531_060--Hb_005321_020 Hb_006831_110 Hb_006831_110 Hb_003531_060--Hb_006831_110 Hb_000283_070 Hb_000283_070 Hb_003531_060--Hb_000283_070 Hb_000107_500 Hb_000107_500 Hb_003531_060--Hb_000107_500 Hb_011030_010 Hb_011030_010 Hb_003531_060--Hb_011030_010 Hb_033187_050 Hb_033187_050 Hb_003531_060--Hb_033187_050 Hb_005321_020--Hb_006831_110 Hb_000563_640 Hb_000563_640 Hb_005321_020--Hb_000563_640 Hb_000645_120 Hb_000645_120 Hb_005321_020--Hb_000645_120 Hb_005321_020--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_005321_020--Hb_009620_050 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_006831_110--Hb_000283_070 Hb_006831_110--Hb_009620_050 Hb_006831_110--Hb_000107_500 Hb_000283_070--Hb_000107_500 Hb_000283_070--Hb_000645_120 Hb_002255_050 Hb_002255_050 Hb_000283_070--Hb_002255_050 Hb_003428_070 Hb_003428_070 Hb_000283_070--Hb_003428_070 Hb_001797_050 Hb_001797_050 Hb_000283_070--Hb_001797_050 Hb_001541_020 Hb_001541_020 Hb_000107_500--Hb_001541_020 Hb_000002_040 Hb_000002_040 Hb_000107_500--Hb_000002_040 Hb_000510_310 Hb_000510_310 Hb_000107_500--Hb_000510_310 Hb_000025_360 Hb_000025_360 Hb_000107_500--Hb_000025_360 Hb_011030_010--Hb_033187_050 Hb_000915_050 Hb_000915_050 Hb_011030_010--Hb_000915_050 Hb_011030_010--Hb_005321_020 Hb_002163_030 Hb_002163_030 Hb_011030_010--Hb_002163_030 Hb_011030_010--Hb_000283_070 Hb_033187_050--Hb_000645_120 Hb_147737_010 Hb_147737_010 Hb_033187_050--Hb_147737_010 Hb_000531_090 Hb_000531_090 Hb_033187_050--Hb_000531_090 Hb_009969_030 Hb_009969_030 Hb_033187_050--Hb_009969_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
345.718 230.727 81.4863 131.442 240.422 302.772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.739 62.4348 199.288 171.952 122.441

CAGE analysis