Hb_003531_070

Information

Type -
Description -
Location Contig3531: 80757-85773
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03150g
description POPTRDRAFT_772510; hypothetical protein
nr
ID XP_012072701.1
description PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
swissprot
ID Q84WW2
description Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1
trembl
ID A0A067L110
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06435 PE=4 SV=1
Gene Ontology
ID GO:0043231
description probable 6-phosphogluconolactonase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36669: 80723-85755 , PASA_asmbl_36670: 77400-80010 , PASA_asmbl_36671: 77445-85755
cDNA
(Sanger)
(ID:Location)		 013_C08.ab1: 77400-79939 , 017_J10.ab1: 77371-85339 , 029_F09.ab1: 77371-85271 , 034_J21.ab1: 77371-85330

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003531_070 0.0 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
2 Hb_000665_140 0.080044237 - - PREDICTED: protein MEMO1 [Jatropha curcas]
3 Hb_000580_120 0.0906906219 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
4 Hb_003058_120 0.094550162 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
5 Hb_000029_140 0.0968438865 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
6 Hb_000120_080 0.0994335311 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
7 Hb_002615_150 0.1010126757 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
8 Hb_004157_050 0.1013816738 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
9 Hb_000167_010 0.1031828331 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002119_130 0.1043005859 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
11 Hb_011218_090 0.1052787584 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
12 Hb_002471_090 0.1054540227 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
13 Hb_006538_090 0.1092130995 - - PREDICTED: IST1 homolog [Jatropha curcas]
14 Hb_000076_210 0.1118445289 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
15 Hb_000120_370 0.1119644495 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
16 Hb_000174_260 0.1121917478 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
17 Hb_005634_010 0.1126036678 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_001493_150 0.1128852367 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
19 Hb_000251_030 0.1135935545 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
20 Hb_001301_110 0.1137695231 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003531_070 Hb_003531_070 Hb_000665_140 Hb_000665_140 Hb_003531_070--Hb_000665_140 Hb_000580_120 Hb_000580_120 Hb_003531_070--Hb_000580_120 Hb_003058_120 Hb_003058_120 Hb_003531_070--Hb_003058_120 Hb_000029_140 Hb_000029_140 Hb_003531_070--Hb_000029_140 Hb_000120_080 Hb_000120_080 Hb_003531_070--Hb_000120_080 Hb_002615_150 Hb_002615_150 Hb_003531_070--Hb_002615_150 Hb_004157_050 Hb_004157_050 Hb_000665_140--Hb_004157_050 Hb_001301_110 Hb_001301_110 Hb_000665_140--Hb_001301_110 Hb_000665_140--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000665_140--Hb_001218_030 Hb_000853_150 Hb_000853_150 Hb_000665_140--Hb_000853_150 Hb_000167_010 Hb_000167_010 Hb_000665_140--Hb_000167_010 Hb_000580_120--Hb_000120_080 Hb_005634_010 Hb_005634_010 Hb_000580_120--Hb_005634_010 Hb_000836_460 Hb_000836_460 Hb_000580_120--Hb_000836_460 Hb_000011_060 Hb_000011_060 Hb_000580_120--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000580_120--Hb_000352_310 Hb_000189_550 Hb_000189_550 Hb_000580_120--Hb_000189_550 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_003058_120--Hb_000167_010 Hb_003058_120--Hb_004157_050 Hb_149985_010 Hb_149985_010 Hb_000029_140--Hb_149985_010 Hb_011218_090 Hb_011218_090 Hb_000029_140--Hb_011218_090 Hb_000029_140--Hb_000120_080 Hb_000012_310 Hb_000012_310 Hb_000029_140--Hb_000012_310 Hb_000029_140--Hb_003058_120 Hb_000029_140--Hb_005634_010 Hb_000120_080--Hb_000352_310 Hb_000120_080--Hb_000189_550 Hb_010863_010 Hb_010863_010 Hb_000120_080--Hb_010863_010 Hb_000120_080--Hb_000011_060 Hb_172426_030 Hb_172426_030 Hb_002615_150--Hb_172426_030 Hb_002615_150--Hb_000029_140 Hb_001141_420 Hb_001141_420 Hb_002615_150--Hb_001141_420 Hb_002615_150--Hb_000580_120 Hb_002615_150--Hb_003058_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0483 36.3572 60.3619 68.6938 25.9622 14.9753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.393 44.3147 51.8774 82.5257 59.5346

CAGE analysis