Hb_003534_040

Information

Type -
Description -
Location Contig3534: 83185-84562
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14420g
description POPTRDRAFT_721570; hypothetical protein
nr
ID XP_002312919.2
description hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
swissprot
ID Q39799
description Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1
trembl
ID B9HQY8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14420g PE=4 SV=2
Gene Ontology
ID GO:0004568
description class i chitinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36680: 83059-84607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003534_040 0.0 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
2 Hb_004007_150 0.1266547489 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
3 Hb_073212_010 0.1691982352 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
4 Hb_018344_010 0.1905629566 - - PREDICTED: endochitinase 2-like [Populus euphratica]
5 Hb_027998_030 0.2021910011 - - laccase, putative [Ricinus communis]
6 Hb_001691_050 0.2085371965 - - -
7 Hb_000101_210 0.2141703647 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
8 Hb_000559_050 0.2226448723 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
9 Hb_088542_010 0.2258434258 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
10 Hb_000879_050 0.2302872846 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
11 Hb_000590_080 0.2307052523 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
12 Hb_002493_030 0.2307118438 - - -
13 Hb_043655_010 0.2316475938 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
14 Hb_001677_050 0.2328005845 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
15 Hb_002609_100 0.2406154037 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
16 Hb_002026_230 0.2424459533 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_031073_010 0.2433389168 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_002234_220 0.2497638106 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
19 Hb_171108_010 0.2498167922 - - -
20 Hb_007634_020 0.2503628875 - - -

Gene co-expression network

sample Hb_003534_040 Hb_003534_040 Hb_004007_150 Hb_004007_150 Hb_003534_040--Hb_004007_150 Hb_073212_010 Hb_073212_010 Hb_003534_040--Hb_073212_010 Hb_018344_010 Hb_018344_010 Hb_003534_040--Hb_018344_010 Hb_027998_030 Hb_027998_030 Hb_003534_040--Hb_027998_030 Hb_001691_050 Hb_001691_050 Hb_003534_040--Hb_001691_050 Hb_000101_210 Hb_000101_210 Hb_003534_040--Hb_000101_210 Hb_004007_150--Hb_073212_010 Hb_004007_150--Hb_000101_210 Hb_001677_050 Hb_001677_050 Hb_004007_150--Hb_001677_050 Hb_031073_010 Hb_031073_010 Hb_004007_150--Hb_031073_010 Hb_088542_010 Hb_088542_010 Hb_004007_150--Hb_088542_010 Hb_073212_010--Hb_088542_010 Hb_000605_010 Hb_000605_010 Hb_073212_010--Hb_000605_010 Hb_012384_050 Hb_012384_050 Hb_073212_010--Hb_012384_050 Hb_073212_010--Hb_001691_050 Hb_001632_010 Hb_001632_010 Hb_073212_010--Hb_001632_010 Hb_005389_110 Hb_005389_110 Hb_018344_010--Hb_005389_110 Hb_116125_010 Hb_116125_010 Hb_018344_010--Hb_116125_010 Hb_000270_210 Hb_000270_210 Hb_018344_010--Hb_000270_210 Hb_105085_010 Hb_105085_010 Hb_018344_010--Hb_105085_010 Hb_018344_010--Hb_001632_010 Hb_004307_040 Hb_004307_040 Hb_027998_030--Hb_004307_040 Hb_000175_530 Hb_000175_530 Hb_027998_030--Hb_000175_530 Hb_007634_020 Hb_007634_020 Hb_027998_030--Hb_007634_020 Hb_000580_060 Hb_000580_060 Hb_027998_030--Hb_000580_060 Hb_000559_050 Hb_000559_050 Hb_027998_030--Hb_000559_050 Hb_001892_160 Hb_001892_160 Hb_027998_030--Hb_001892_160 Hb_002493_030 Hb_002493_030 Hb_001691_050--Hb_002493_030 Hb_001691_050--Hb_088542_010 Hb_043655_010 Hb_043655_010 Hb_001691_050--Hb_043655_010 Hb_001691_050--Hb_007634_020 Hb_002232_290 Hb_002232_290 Hb_001691_050--Hb_002232_290 Hb_004206_040 Hb_004206_040 Hb_000101_210--Hb_004206_040 Hb_000544_120 Hb_000544_120 Hb_000101_210--Hb_000544_120 Hb_035360_010 Hb_035360_010 Hb_000101_210--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_000101_210--Hb_000779_040 Hb_000211_080 Hb_000211_080 Hb_000101_210--Hb_000211_080 Hb_000890_220 Hb_000890_220 Hb_000101_210--Hb_000890_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.104 23.6327 1.58034 1.92997 86.1287 40.3648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47277 0.295938 0 17.294 3.87838

CAGE analysis