Hb_003538_020

Information

Type -
Description -
Location Contig3538: 103296-105076
Sequence    

Annotation

kegg
ID rcu:RCOM_1574420
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative (EC:1.14.13.71)
nr
ID XP_002513347.1
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
swissprot
ID O64899
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1
trembl
ID B9RHX8
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative OS=Ricinus communis GN=RCOM_1574420 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36687: 103511-104994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003538_020 0.0 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
2 Hb_002534_080 0.1026198276 - - zinc finger protein, putative [Ricinus communis]
3 Hb_003891_060 0.1142194132 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
4 Hb_006478_180 0.1186584432 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
5 Hb_112082_030 0.1210939819 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_005511_050 0.1227806567 - - hypothetical protein POPTR_0008s04130g [Populus trichocarpa]
7 Hb_002758_040 0.1276233292 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_027402_120 0.1284303915 - - zinc finger protein, putative [Ricinus communis]
9 Hb_042664_010 0.128690167 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
10 Hb_006196_020 0.1305974477 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
11 Hb_002615_050 0.1338074465 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_011671_380 0.1367975649 - - Blue copper protein precursor, putative [Ricinus communis]
13 Hb_002900_020 0.1381487238 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
14 Hb_000352_080 0.1393851889 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
15 Hb_178389_020 0.1396962279 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
16 Hb_000488_040 0.1402934193 - - unnamed protein product [Vitis vinifera]
17 Hb_000445_020 0.1408029985 - - GABA-specific permease, putative [Ricinus communis]
18 Hb_004564_010 0.1422895905 - - receptor-kinase, putative [Ricinus communis]
19 Hb_000160_230 0.1431675808 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_007810_140 0.1432918767 - - Ankyrin repeat-containing protein [Medicago truncatula]

Gene co-expression network

sample Hb_003538_020 Hb_003538_020 Hb_002534_080 Hb_002534_080 Hb_003538_020--Hb_002534_080 Hb_003891_060 Hb_003891_060 Hb_003538_020--Hb_003891_060 Hb_006478_180 Hb_006478_180 Hb_003538_020--Hb_006478_180 Hb_112082_030 Hb_112082_030 Hb_003538_020--Hb_112082_030 Hb_005511_050 Hb_005511_050 Hb_003538_020--Hb_005511_050 Hb_002758_040 Hb_002758_040 Hb_003538_020--Hb_002758_040 Hb_042664_010 Hb_042664_010 Hb_002534_080--Hb_042664_010 Hb_005464_040 Hb_005464_040 Hb_002534_080--Hb_005464_040 Hb_027402_120 Hb_027402_120 Hb_002534_080--Hb_027402_120 Hb_000025_250 Hb_000025_250 Hb_002534_080--Hb_000025_250 Hb_001901_090 Hb_001901_090 Hb_002534_080--Hb_001901_090 Hb_002615_050 Hb_002615_050 Hb_002534_080--Hb_002615_050 Hb_000155_140 Hb_000155_140 Hb_003891_060--Hb_000155_140 Hb_000352_080 Hb_000352_080 Hb_003891_060--Hb_000352_080 Hb_000446_100 Hb_000446_100 Hb_003891_060--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_003891_060--Hb_004254_070 Hb_003891_060--Hb_001901_090 Hb_001456_040 Hb_001456_040 Hb_003891_060--Hb_001456_040 Hb_006478_180--Hb_002758_040 Hb_132880_030 Hb_132880_030 Hb_006478_180--Hb_132880_030 Hb_006478_180--Hb_112082_030 Hb_006478_180--Hb_005511_050 Hb_000010_120 Hb_000010_120 Hb_006478_180--Hb_000010_120 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_005511_050--Hb_132880_030 Hb_000160_230 Hb_000160_230 Hb_005511_050--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_005511_050--Hb_007810_140 Hb_039342_030 Hb_039342_030 Hb_005511_050--Hb_039342_030 Hb_001999_220 Hb_001999_220 Hb_005511_050--Hb_001999_220 Hb_000859_040 Hb_000859_040 Hb_005511_050--Hb_000859_040 Hb_016172_010 Hb_016172_010 Hb_002758_040--Hb_016172_010 Hb_010712_020 Hb_010712_020 Hb_002758_040--Hb_010712_020 Hb_002758_040--Hb_000160_230 Hb_002758_040--Hb_001999_220 Hb_002758_040--Hb_027402_120 Hb_002758_040--Hb_007810_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.423343 0.0723244 0.0977153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0808432 0.0848075 0 4.57943 0

CAGE analysis