Hb_003540_010

Information

Type -
Description -
Location Contig3540: 6993-7783
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_010 0.0 - - -
2 Hb_000917_220 0.0266459098 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
3 Hb_003216_010 0.0380934125 - - glycosyl hydrolase family protein [Populus trichocarpa]
4 Hb_178968_010 0.0450543036 - - hypothetical protein JCGZ_15830 [Jatropha curcas]
5 Hb_174829_030 0.0544419021 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004137_090 0.0673671551 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
7 Hb_000053_150 0.0692006187 - - clavata3/esr-related 12 family protein [Populus trichocarpa]
8 Hb_018671_010 0.0694947709 - - -
9 Hb_005057_020 0.0701429888 - - PREDICTED: uncharacterized protein LOC105631610 [Jatropha curcas]
10 Hb_000696_120 0.0711819648 - - PREDICTED: protein FD [Populus euphratica]
11 Hb_002186_120 0.0749404016 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X5 [Populus euphratica]
12 Hb_000224_050 0.0789435672 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010080_040 0.0793294796 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003561_020 0.0801687927 - - gulonolactone oxidase, putative [Ricinus communis]
15 Hb_151027_010 0.0866666116 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
16 Hb_000224_020 0.091155666 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
17 Hb_122079_010 0.0917219175 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
18 Hb_000203_120 0.0966250913 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007290_010 0.0966467437 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001006_130 0.0968964006 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_010 Hb_003540_010 Hb_000917_220 Hb_000917_220 Hb_003540_010--Hb_000917_220 Hb_003216_010 Hb_003216_010 Hb_003540_010--Hb_003216_010 Hb_178968_010 Hb_178968_010 Hb_003540_010--Hb_178968_010 Hb_174829_030 Hb_174829_030 Hb_003540_010--Hb_174829_030 Hb_004137_090 Hb_004137_090 Hb_003540_010--Hb_004137_090 Hb_000053_150 Hb_000053_150 Hb_003540_010--Hb_000053_150 Hb_000917_220--Hb_174829_030 Hb_000917_220--Hb_003216_010 Hb_000917_220--Hb_178968_010 Hb_151027_010 Hb_151027_010 Hb_000917_220--Hb_151027_010 Hb_000917_220--Hb_004137_090 Hb_005057_020 Hb_005057_020 Hb_003216_010--Hb_005057_020 Hb_000696_120 Hb_000696_120 Hb_003216_010--Hb_000696_120 Hb_003216_010--Hb_174829_030 Hb_003216_010--Hb_178968_010 Hb_178968_010--Hb_000053_150 Hb_018671_010 Hb_018671_010 Hb_178968_010--Hb_018671_010 Hb_122079_010 Hb_122079_010 Hb_178968_010--Hb_122079_010 Hb_002186_120 Hb_002186_120 Hb_178968_010--Hb_002186_120 Hb_174829_030--Hb_000696_120 Hb_174829_030--Hb_151027_010 Hb_010080_040 Hb_010080_040 Hb_174829_030--Hb_010080_040 Hb_001006_080 Hb_001006_080 Hb_174829_030--Hb_001006_080 Hb_003561_020 Hb_003561_020 Hb_004137_090--Hb_003561_020 Hb_007290_010 Hb_007290_010 Hb_004137_090--Hb_007290_010 Hb_004137_090--Hb_178968_010 Hb_004137_090--Hb_003216_010 Hb_004137_090--Hb_000053_150 Hb_000053_150--Hb_122079_010 Hb_000053_150--Hb_005057_020 Hb_000053_150--Hb_018671_010 Hb_000053_150--Hb_002186_120 Hb_010812_080 Hb_010812_080 Hb_000053_150--Hb_010812_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0973806 0.174716 1.21917 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis