Hb_003540_050

Information

Type -
Description -
Location Contig3540: 32164-36987
Sequence    

Annotation

kegg
ID vvi:100252026
description plant intracellular Ras-group-related LRR protein 6
nr
ID XP_012084929.1
description PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
swissprot
ID Q6K7R2
description Plant intracellular Ras-group-related LRR protein 6 OS=Oryza sativa subsp. japonica GN=IRL6 PE=2 SV=1
trembl
ID A0A067K447
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20965 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36696: 31978-32175 , PASA_asmbl_36697: 32191-52927 , PASA_asmbl_36698: 32191-52891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_050 0.0 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
2 Hb_000072_300 0.0610008714 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
3 Hb_002686_080 0.0766249703 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
4 Hb_005064_010 0.0793353657 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
5 Hb_001053_190 0.0796957854 - - ADP,ATP carrier protein, putative [Ricinus communis]
6 Hb_001279_190 0.0809518731 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
7 Hb_002740_080 0.0815653159 - - flap endonuclease-1, putative [Ricinus communis]
8 Hb_007483_070 0.0852267648 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
9 Hb_000227_390 0.088222174 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
10 Hb_011716_010 0.0907997611 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
11 Hb_000656_300 0.0933217499 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
12 Hb_001227_120 0.0934546729 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
13 Hb_000160_070 0.0937164697 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
14 Hb_007919_110 0.0942148844 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
15 Hb_000753_160 0.0946167312 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
16 Hb_074399_010 0.0971864415 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
17 Hb_004064_040 0.0986750476 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
18 Hb_001504_010 0.099411469 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_000029_400 0.1005493494 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
20 Hb_004228_120 0.1013199646 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]

Gene co-expression network

sample Hb_003540_050 Hb_003540_050 Hb_000072_300 Hb_000072_300 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_000072_300--Hb_002740_080 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_000072_300--Hb_002686_080 Hb_000072_300--Hb_005064_010 Hb_000152_600 Hb_000152_600 Hb_000072_300--Hb_000152_600 Hb_002686_080--Hb_001053_190 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_000890_130 Hb_000890_130 Hb_002686_080--Hb_000890_130 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_004064_040 Hb_004064_040 Hb_005064_010--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_005064_010--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_005064_010--Hb_001002_060 Hb_001227_120 Hb_001227_120 Hb_005064_010--Hb_001227_120 Hb_000160_070 Hb_000160_070 Hb_005064_010--Hb_000160_070 Hb_000724_020 Hb_000724_020 Hb_001053_190--Hb_000724_020 Hb_000029_400 Hb_000029_400 Hb_001053_190--Hb_000029_400 Hb_000318_220 Hb_000318_220 Hb_001053_190--Hb_000318_220 Hb_001053_190--Hb_016448_010 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001279_190--Hb_001227_120 Hb_081599_010 Hb_081599_010 Hb_002740_080--Hb_081599_010 Hb_002740_080--Hb_001279_190 Hb_002740_080--Hb_000160_070 Hb_000815_300 Hb_000815_300 Hb_002740_080--Hb_000815_300 Hb_002740_080--Hb_001227_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1588 11.8143 35.2805 35.6175 10.6511 9.15802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.577 10.6662 7.22396 14.9542 16.8686

CAGE analysis