Hb_003540_070

Information

Type -
Description -
Location Contig3540: 43060-44667
Sequence    

Annotation

kegg
ID sita:101768429
description uncharacterized LOC101768429
nr
ID XP_011101607.1
description PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID B8B5X3
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_25921 PE=4 SV=1
Gene Ontology
ID GO:0043170
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36699: 43320-44255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_070 0.0 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
2 Hb_003291_030 0.1533966573 - - Gag-pol protein, putative [Solanum demissum]
3 Hb_008484_020 0.1545318272 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_001295_080 0.1668899396 - - Protein KES1, putative [Ricinus communis]
5 Hb_023738_010 0.1685009594 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
6 Hb_000951_070 0.176966758 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
7 Hb_029510_060 0.1775935277 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
8 Hb_010402_040 0.1817736372 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
9 Hb_011649_030 0.1855112099 - - hypothetical protein [Vitis hybrid cultivar]
10 Hb_004291_050 0.1871381563 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
11 Hb_041813_060 0.1886030704 - - ribosomal protein L10 (mitochondrion) [Ricinus communis]
12 Hb_172486_010 0.189306395 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_004374_090 0.1908272344 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
14 Hb_002030_050 0.1919187586 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
15 Hb_057880_020 0.1931817515 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
16 Hb_000139_030 0.1933986509 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
17 Hb_003944_010 0.1971981608 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_003440_080 0.1979724649 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_004242_120 0.1980865232 - - Organic cation transporter, putative [Ricinus communis]
20 Hb_007201_010 0.1984741273 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_070 Hb_003540_070 Hb_003291_030 Hb_003291_030 Hb_003540_070--Hb_003291_030 Hb_008484_020 Hb_008484_020 Hb_003540_070--Hb_008484_020 Hb_001295_080 Hb_001295_080 Hb_003540_070--Hb_001295_080 Hb_023738_010 Hb_023738_010 Hb_003540_070--Hb_023738_010 Hb_000951_070 Hb_000951_070 Hb_003540_070--Hb_000951_070 Hb_029510_060 Hb_029510_060 Hb_003540_070--Hb_029510_060 Hb_011649_030 Hb_011649_030 Hb_003291_030--Hb_011649_030 Hb_003291_030--Hb_008484_020 Hb_001946_130 Hb_001946_130 Hb_003291_030--Hb_001946_130 Hb_000574_330 Hb_000574_330 Hb_003291_030--Hb_000574_330 Hb_000352_060 Hb_000352_060 Hb_003291_030--Hb_000352_060 Hb_003687_160 Hb_003687_160 Hb_003291_030--Hb_003687_160 Hb_172486_010 Hb_172486_010 Hb_008484_020--Hb_172486_010 Hb_008484_020--Hb_001946_130 Hb_008484_020--Hb_011649_030 Hb_007793_030 Hb_007793_030 Hb_008484_020--Hb_007793_030 Hb_001146_030 Hb_001146_030 Hb_001295_080--Hb_001146_030 Hb_002620_040 Hb_002620_040 Hb_001295_080--Hb_002620_040 Hb_000139_030 Hb_000139_030 Hb_001295_080--Hb_000139_030 Hb_010021_040 Hb_010021_040 Hb_001295_080--Hb_010021_040 Hb_057880_020 Hb_057880_020 Hb_001295_080--Hb_057880_020 Hb_000462_160 Hb_000462_160 Hb_001295_080--Hb_000462_160 Hb_023738_010--Hb_029510_060 Hb_093388_010 Hb_093388_010 Hb_023738_010--Hb_093388_010 Hb_004374_090 Hb_004374_090 Hb_023738_010--Hb_004374_090 Hb_001250_030 Hb_001250_030 Hb_023738_010--Hb_001250_030 Hb_003302_010 Hb_003302_010 Hb_023738_010--Hb_003302_010 Hb_000441_080 Hb_000441_080 Hb_023738_010--Hb_000441_080 Hb_010402_040 Hb_010402_040 Hb_000951_070--Hb_010402_040 Hb_000668_180 Hb_000668_180 Hb_000951_070--Hb_000668_180 Hb_089305_040 Hb_089305_040 Hb_000951_070--Hb_089305_040 Hb_003796_010 Hb_003796_010 Hb_000951_070--Hb_003796_010 Hb_003440_080 Hb_003440_080 Hb_000951_070--Hb_003440_080 Hb_004117_320 Hb_004117_320 Hb_000951_070--Hb_004117_320 Hb_029510_060--Hb_093388_010 Hb_119832_010 Hb_119832_010 Hb_029510_060--Hb_119832_010 Hb_029510_060--Hb_001250_030 Hb_029510_060--Hb_000951_070 Hb_029510_060--Hb_003796_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0886627 0.0664698 0.0515601 0 0.0374893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154028 0.471527

CAGE analysis