Hb_003540_120

Information

Type -
Description -
Location Contig3540: 77232-89478
Sequence    

Annotation

kegg
ID rcu:RCOM_1124820
description calmodulin binding protein, putative
nr
ID XP_002528562.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID Q9FI00
description MLO-like protein 11 OS=Arabidopsis thaliana GN=MLO11 PE=2 SV=1
trembl
ID B9SRE3
description MLO-like protein OS=Ricinus communis GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016020
description mlo-like protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36704: 77167-77549 , PASA_asmbl_36705: 87790-88125 , PASA_asmbl_36706: 88849-88974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_120 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_030685_010 0.1125552126 - - -
3 Hb_001597_030 0.1146906606 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
4 Hb_003606_050 0.115066437 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
5 Hb_001188_050 0.1186244906 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001823_090 0.1198610022 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002681_120 0.1264584162 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
8 Hb_000735_060 0.1305592145 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
9 Hb_012395_050 0.1354878577 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
10 Hb_155444_010 0.1381124837 - - -
11 Hb_020805_040 0.1403810552 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
12 Hb_005333_080 0.1412398284 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012760_090 0.1415043369 - - Aspartic proteinase-like protein 1 [Morus notabilis]
14 Hb_000077_110 0.1441178847 - - PREDICTED: uncharacterized protein LOC105646935 [Jatropha curcas]
15 Hb_000023_110 0.1446177112 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
16 Hb_023226_030 0.1447564464 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
17 Hb_186247_010 0.1456366357 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]
18 Hb_003728_110 0.1474477082 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
19 Hb_000834_220 0.1483610496 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
20 Hb_001019_160 0.1519110381 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003540_120 Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_001188_050 Hb_001188_050 Hb_003540_120--Hb_001188_050 Hb_001823_090 Hb_001823_090 Hb_003540_120--Hb_001823_090 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_000093_090 Hb_000093_090 Hb_030685_010--Hb_000093_090 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_030685_010--Hb_001188_050 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040 Hb_000834_220 Hb_000834_220 Hb_001597_030--Hb_000834_220 Hb_001157_190 Hb_001157_190 Hb_001597_030--Hb_001157_190 Hb_000011_370 Hb_000011_370 Hb_001597_030--Hb_000011_370 Hb_000749_120 Hb_000749_120 Hb_001597_030--Hb_000749_120 Hb_001138_070 Hb_001138_070 Hb_001597_030--Hb_001138_070 Hb_000735_060 Hb_000735_060 Hb_003606_050--Hb_000735_060 Hb_005568_020 Hb_005568_020 Hb_003606_050--Hb_005568_020 Hb_000008_200 Hb_000008_200 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_003606_050--Hb_001188_050 Hb_001936_180 Hb_001936_180 Hb_003606_050--Hb_001936_180 Hb_186247_010 Hb_186247_010 Hb_001188_050--Hb_186247_010 Hb_000963_050 Hb_000963_050 Hb_001188_050--Hb_000963_050 Hb_000274_050 Hb_000274_050 Hb_001188_050--Hb_000274_050 Hb_001823_090--Hb_000735_060 Hb_001823_090--Hb_001597_030 Hb_001823_090--Hb_003606_050 Hb_001863_010 Hb_001863_010 Hb_001823_090--Hb_001863_010 Hb_001823_090--Hb_000834_220 Hb_000363_260 Hb_000363_260 Hb_002681_120--Hb_000363_260 Hb_019654_060 Hb_019654_060 Hb_002681_120--Hb_019654_060 Hb_001119_070 Hb_001119_070 Hb_002681_120--Hb_001119_070 Hb_000581_030 Hb_000581_030 Hb_002681_120--Hb_000581_030 Hb_003929_190 Hb_003929_190 Hb_002681_120--Hb_003929_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127204 0.442795 1.74592 2.51694 0.0578107 0.197446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.102451 0.0671821 0.0256313 0.832173 0.657356

CAGE analysis