Hb_003540_140

Information

Type -
Description -
Location Contig3540: 93163-101361
Sequence    

Annotation

kegg
ID rcu:RCOM_1124350
description hypothetical protein
nr
ID XP_012084940.1
description PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
swissprot
ID Q8BY89
description Choline transporter-like protein 2 OS=Mus musculus GN=Slc44a2 PE=1 SV=2
trembl
ID A0A067JSV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20971 PE=4 SV=1
Gene Ontology
ID GO:0005886
description choline transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36708: 100323-101357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_140 0.0 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
2 Hb_002769_040 0.0982261755 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
3 Hb_000441_230 0.100565662 - - unnamed protein product [Coffea canephora]
4 Hb_000329_540 0.111083987 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
5 Hb_000156_030 0.1212853896 - - conserved hypothetical protein [Ricinus communis]
6 Hb_061256_030 0.1230881515 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_003226_170 0.123376225 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
8 Hb_003673_020 0.1315774835 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
9 Hb_000211_080 0.1341212974 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_005568_070 0.1370912968 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
11 Hb_002506_110 0.1384877367 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
12 Hb_005271_030 0.1405627229 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_010290_020 0.1462074267 - - RAB6-interacting protein, putative [Ricinus communis]
14 Hb_000580_060 0.1486328964 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
15 Hb_000056_120 0.1488992349 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_172256_010 0.1509604002 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_000365_350 0.1518878031 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
18 Hb_002837_070 0.1520339065 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
19 Hb_003360_020 0.1520673076 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
20 Hb_000856_100 0.1537081963 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_140 Hb_003540_140 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_000441_230 Hb_000441_230 Hb_003540_140--Hb_000441_230 Hb_000329_540 Hb_000329_540 Hb_003540_140--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170 Hb_002769_040--Hb_061256_030 Hb_002769_040--Hb_003226_170 Hb_002253_110 Hb_002253_110 Hb_002769_040--Hb_002253_110 Hb_077219_010 Hb_077219_010 Hb_002769_040--Hb_077219_010 Hb_005271_030 Hb_005271_030 Hb_002769_040--Hb_005271_030 Hb_000441_230--Hb_000329_540 Hb_002506_110 Hb_002506_110 Hb_000441_230--Hb_002506_110 Hb_000441_230--Hb_003226_170 Hb_000441_230--Hb_005271_030 Hb_000580_060 Hb_000580_060 Hb_000441_230--Hb_000580_060 Hb_000329_540--Hb_000156_030 Hb_005568_070 Hb_005568_070 Hb_000329_540--Hb_005568_070 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000329_540--Hb_000580_060 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_002837_070 Hb_002837_070 Hb_061256_030--Hb_002837_070 Hb_061256_030--Hb_003226_170 Hb_003673_020 Hb_003673_020 Hb_061256_030--Hb_003673_020 Hb_174865_050 Hb_174865_050 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_003226_170--Hb_003673_020 Hb_003226_170--Hb_002837_070 Hb_001846_080 Hb_001846_080 Hb_003226_170--Hb_001846_080 Hb_003226_170--Hb_174865_050 Hb_005016_150 Hb_005016_150 Hb_003226_170--Hb_005016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
125.938 4.99821 4.93823 9.49994 108.248 137.228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6409 3.32267 20.744 7.10151 4.369

CAGE analysis