Hb_003540_170

Information

Type -
Description -
Location Contig3540: 109598-110545
Sequence    

Annotation

kegg
ID rcu:RCOM_1010390
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084942.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
swissprot
ID Q84JR3
description Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1
trembl
ID A0A067K458
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36713: 110923-111821
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
2 Hb_004374_090 0.1551001235 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
3 Hb_168319_040 0.1658765663 - - PREDICTED: cytochrome P450 CYP749A22-like [Jatropha curcas]
4 Hb_000826_080 0.168759646 - - -
5 Hb_000360_010 0.1777232683 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_003302_010 0.1799643465 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
7 Hb_007201_010 0.1800503347 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
8 Hb_005623_060 0.1802764586 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_023738_010 0.1802980954 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
10 Hb_005678_030 0.1805597264 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
11 Hb_001793_040 0.1840141243 - - hypothetical protein VITISV_006810 [Vitis vinifera]
12 Hb_000512_050 0.1842216429 - - hypothetical protein VITISV_005640 [Vitis vinifera]
13 Hb_034168_010 0.1847370957 - - hypothetical protein [Azospirillum sp. CAG:260]
14 Hb_000522_030 0.184738516 - - hypothetical protein VITISV_006017 [Vitis vinifera]
15 Hb_000135_080 0.185109167 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_080033_020 0.1863494514 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
17 Hb_006040_150 0.1870163794 - - -
18 Hb_032733_030 0.1908328796 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
19 Hb_000476_030 0.1929659816 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
20 Hb_012528_040 0.1941164607 - - -

Gene co-expression network

sample Hb_003540_170 Hb_003540_170 Hb_004374_090 Hb_004374_090 Hb_003540_170--Hb_004374_090 Hb_168319_040 Hb_168319_040 Hb_003540_170--Hb_168319_040 Hb_000826_080 Hb_000826_080 Hb_003540_170--Hb_000826_080 Hb_000360_010 Hb_000360_010 Hb_003540_170--Hb_000360_010 Hb_003302_010 Hb_003302_010 Hb_003540_170--Hb_003302_010 Hb_007201_010 Hb_007201_010 Hb_003540_170--Hb_007201_010 Hb_023738_010 Hb_023738_010 Hb_004374_090--Hb_023738_010 Hb_004374_090--Hb_007201_010 Hb_004374_090--Hb_168319_040 Hb_034168_010 Hb_034168_010 Hb_004374_090--Hb_034168_010 Hb_093388_010 Hb_093388_010 Hb_004374_090--Hb_093388_010 Hb_005678_030 Hb_005678_030 Hb_004374_090--Hb_005678_030 Hb_000441_080 Hb_000441_080 Hb_168319_040--Hb_000441_080 Hb_077151_010 Hb_077151_010 Hb_168319_040--Hb_077151_010 Hb_001579_050 Hb_001579_050 Hb_168319_040--Hb_001579_050 Hb_001691_170 Hb_001691_170 Hb_168319_040--Hb_001691_170 Hb_000858_050 Hb_000858_050 Hb_168319_040--Hb_000858_050 Hb_168319_040--Hb_005678_030 Hb_006040_150 Hb_006040_150 Hb_000826_080--Hb_006040_150 Hb_080033_020 Hb_080033_020 Hb_000826_080--Hb_080033_020 Hb_005623_060 Hb_005623_060 Hb_000826_080--Hb_005623_060 Hb_000512_050 Hb_000512_050 Hb_000826_080--Hb_000512_050 Hb_150516_010 Hb_150516_010 Hb_000826_080--Hb_150516_010 Hb_011900_020 Hb_011900_020 Hb_000360_010--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_106552_030 Hb_106552_030 Hb_000360_010--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_000360_010--Hb_000359_070 Hb_010080_070 Hb_010080_070 Hb_000360_010--Hb_010080_070 Hb_003302_010--Hb_023738_010 Hb_003302_010--Hb_080033_020 Hb_144045_010 Hb_144045_010 Hb_003302_010--Hb_144045_010 Hb_003302_010--Hb_000512_050 Hb_005092_090 Hb_005092_090 Hb_003302_010--Hb_005092_090 Hb_000060_130 Hb_000060_130 Hb_003302_010--Hb_000060_130 Hb_003944_010 Hb_003944_010 Hb_007201_010--Hb_003944_010 Hb_007201_010--Hb_003905_030 Hb_007201_010--Hb_000360_010 Hb_007201_010--Hb_010080_070 Hb_001081_050 Hb_001081_050 Hb_007201_010--Hb_001081_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317608 0.138863 0.217098 0.0302554 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0575457 0 0.116719 1.49221

CAGE analysis