Hb_003540_200

Information

Type -
Description -
Location Contig3540: 117064-117852
Sequence    

Annotation

kegg
ID rcu:RCOM_1010170
description rnf5, putative
nr
ID XP_012084944.1
description PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
swissprot
ID Q6R567
description E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1
trembl
ID A0A067JT22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20977 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase rma3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36714: 117137-119183 , PASA_asmbl_36716: 118562-118702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_200 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
2 Hb_000110_170 0.0958502845 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_003020_330 0.1087778405 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
4 Hb_001225_010 0.1161184611 - - unnamed protein product [Coffea canephora]
5 Hb_000291_270 0.1163823769 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
6 Hb_012053_010 0.1188100469 - - srpk, putative [Ricinus communis]
7 Hb_154141_030 0.1231155808 - - PREDICTED: histone H2AX [Populus euphratica]
8 Hb_000878_020 0.1241813523 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
9 Hb_027472_160 0.126043134 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
10 Hb_009778_040 0.1304366121 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
11 Hb_006588_080 0.1346125589 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
12 Hb_004735_050 0.1351447761 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
13 Hb_001449_090 0.1384619261 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_007313_080 0.1431684065 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
15 Hb_001766_030 0.1444606632 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
16 Hb_002838_030 0.144844653 - - 40S ribosomal protein S25A [Hevea brasiliensis]
17 Hb_002344_070 0.1468723672 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
18 Hb_147752_010 0.1485242044 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
19 Hb_000915_120 0.1510381528 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
20 Hb_025645_030 0.1531626408 - - -

Gene co-expression network

sample Hb_003540_200 Hb_003540_200 Hb_000110_170 Hb_000110_170 Hb_003540_200--Hb_000110_170 Hb_003020_330 Hb_003020_330 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_000291_270 Hb_000291_270 Hb_003540_200--Hb_000291_270 Hb_012053_010 Hb_012053_010 Hb_003540_200--Hb_012053_010 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_000110_170--Hb_001225_010 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_001172_100 Hb_001172_100 Hb_001225_010--Hb_001172_100 Hb_001225_010--Hb_003020_330 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_001225_010--Hb_000878_020 Hb_000291_270--Hb_154141_030 Hb_000483_090 Hb_000483_090 Hb_000291_270--Hb_000483_090 Hb_000291_270--Hb_003020_330 Hb_001016_080 Hb_001016_080 Hb_000291_270--Hb_001016_080 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_012053_010--Hb_000878_020 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_012053_010--Hb_000110_170 Hb_000768_130 Hb_000768_130 Hb_154141_030--Hb_000768_130 Hb_002900_130 Hb_002900_130 Hb_154141_030--Hb_002900_130 Hb_154141_030--Hb_003020_330 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_154141_030--Hb_002838_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.56318 4.37165 9.82161 17.8323 2.39228 5.18203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7596 88.533 26.3639 11.0314 5.09226

CAGE analysis