Hb_003540_230

Information

Type -
Description -
Location Contig3540: 146928-152409
Sequence    

Annotation

kegg
ID rcu:RCOM_1095760
description Sphingosine kinase, putative (EC:2.7.1.138)
nr
ID XP_012091503.1
description PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8L7L1
description Sphingosine kinase 1 OS=Arabidopsis thaliana GN=SPHK1 PE=1 SV=1
trembl
ID A0A067JAU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21363 PE=4 SV=1
Gene Ontology
ID GO:0001729
description sphingosine kinase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36718: 147002-152271 , PASA_asmbl_36719: 149586-152271 , PASA_asmbl_36720: 151486-152244
cDNA
(Sanger)
(ID:Location)		 008_M09.ab1: 150421-152214 , 021_L03.ab1: 151486-152244 , 050_H08.ab1: 150466-152211

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_230 0.0 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
2 Hb_002235_230 0.0895140779 - - latex abundant protein 1 [Hevea brasiliensis]
3 Hb_029584_140 0.0919228014 - - senescence-associated family protein [Populus trichocarpa]
4 Hb_000580_170 0.0928112364 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
5 Hb_005016_130 0.0942970797 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
6 Hb_012799_060 0.0959444689 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_003038_180 0.1011544325 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
8 Hb_048141_010 0.1039855901 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
9 Hb_001741_080 0.1059474469 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
10 Hb_006816_440 0.1062632434 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_000206_220 0.1079404146 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
12 Hb_124315_040 0.1093448224 - - hypothetical protein 19 [Hevea brasiliensis]
13 Hb_008847_010 0.1143058032 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_060668_010 0.1153671193 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
15 Hb_000130_390 0.1188105851 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
16 Hb_006132_060 0.1202402987 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
17 Hb_001631_080 0.1213703602 - - PREDICTED: importin-5-like [Populus euphratica]
18 Hb_000005_030 0.1229799193 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
19 Hb_000184_180 0.1239095765 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
20 Hb_001999_120 0.1243868164 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_230 Hb_003540_230 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_005016_130 Hb_005016_130 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_006816_440 Hb_006816_440 Hb_002235_230--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_002235_230--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_002235_230--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_002235_230--Hb_001741_090 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_029584_140--Hb_003038_180 Hb_029584_140--Hb_012799_060 Hb_029584_140--Hb_000580_170 Hb_007120_070 Hb_007120_070 Hb_029584_140--Hb_007120_070 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_000580_170--Hb_012799_060 Hb_000078_030 Hb_000078_030 Hb_000580_170--Hb_000078_030 Hb_000580_170--Hb_001741_080 Hb_000580_170--Hb_005016_130 Hb_001102_010 Hb_001102_010 Hb_000580_170--Hb_001102_010 Hb_115919_020 Hb_115919_020 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_012799_060--Hb_000078_030 Hb_012799_060--Hb_001741_080 Hb_012799_060--Hb_030765_020 Hb_012799_060--Hb_005016_130 Hb_000062_580 Hb_000062_580 Hb_003038_180--Hb_000062_580 Hb_001999_120 Hb_001999_120 Hb_003038_180--Hb_001999_120 Hb_001722_040 Hb_001722_040 Hb_003038_180--Hb_001722_040 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
456.891 13.6424 5.38978 41.7892 189.947 259.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
868.531 362.323 372.707 33.7988 5.46937

CAGE analysis