Hb_003540_240

Information

Type -
Description -
Location Contig3540: 165434-168858
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04320g
description POPTRDRAFT_822798; hypothetical protein
nr
ID XP_012091502.1
description PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21362 PE=4 SV=1
Gene Ontology
ID GO:0006310
description ribosomal rna-processing protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36722: 165489-168824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_240 0.0 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
2 Hb_002056_050 0.062274334 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
3 Hb_000441_110 0.0683547087 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
4 Hb_002235_350 0.0746756682 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
5 Hb_004127_020 0.0752009627 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
6 Hb_000169_040 0.0752639263 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
7 Hb_002798_020 0.0781523368 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
8 Hb_000046_050 0.0792245422 - - PREDICTED: LEC14B homolog [Jatropha curcas]
9 Hb_004143_150 0.0795531261 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
10 Hb_000479_090 0.0811585597 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
11 Hb_000920_110 0.0821023488 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
12 Hb_000172_320 0.0851083341 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
13 Hb_000384_100 0.0864531369 - - hydrolase, putative [Ricinus communis]
14 Hb_006198_070 0.0872535987 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
15 Hb_026527_050 0.0876934672 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
16 Hb_000265_050 0.0890837617 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
17 Hb_004102_110 0.0902579722 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
18 Hb_001484_070 0.0919916058 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000107_160 0.0934691832 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
20 Hb_004324_270 0.093550995 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_240 Hb_003540_240 Hb_002056_050 Hb_002056_050 Hb_003540_240--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_000920_110 Hb_000920_110 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070 Hb_011671_100 Hb_011671_100 Hb_000441_110--Hb_011671_100 Hb_006478_150 Hb_006478_150 Hb_000441_110--Hb_006478_150 Hb_000441_110--Hb_002056_050 Hb_004567_120 Hb_004567_120 Hb_000441_110--Hb_004567_120 Hb_004453_020 Hb_004453_020 Hb_000441_110--Hb_004453_020 Hb_001780_040 Hb_001780_040 Hb_002235_350--Hb_001780_040 Hb_000574_160 Hb_000574_160 Hb_002235_350--Hb_000574_160 Hb_000906_040 Hb_000906_040 Hb_002235_350--Hb_000906_040 Hb_001979_040 Hb_001979_040 Hb_002235_350--Hb_001979_040 Hb_002235_350--Hb_001484_070 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_000169_040--Hb_000840_180 Hb_000169_040--Hb_002056_050 Hb_000169_040--Hb_002798_020 Hb_007220_010 Hb_007220_010 Hb_000169_040--Hb_007220_010 Hb_000169_040--Hb_004127_020 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_002798_020--Hb_000265_050 Hb_002798_020--Hb_003226_100 Hb_002798_020--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3253 14.045 19.6842 16.1159 19.476 22.8069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6177 68.3356 26.4615 18.9936 24.5763

CAGE analysis