Hb_003540_250

Information

Type -
Description -
Location Contig3540: 172604-178590
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04310g
description POPTRDRAFT_568295; calmodulin-binding protein 60-C
nr
ID XP_012091499.1
description PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
swissprot
ID Q9FKL6
description Calmodulin-binding protein 60 B OS=Arabidopsis thaliana GN=CBP60B PE=2 SV=1
trembl
ID A0A067JLK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21361 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36723: 172667-178580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003540_250 0.0 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
2 Hb_000815_310 0.0651988555 - - protein kinase, putative [Ricinus communis]
3 Hb_005305_100 0.0769064707 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_033152_090 0.0772354195 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
5 Hb_000956_040 0.0798682566 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
6 Hb_000179_190 0.0800787986 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
7 Hb_002248_130 0.0815820816 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
8 Hb_002965_050 0.0894726357 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
9 Hb_017214_040 0.090803255 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
10 Hb_000137_010 0.0911698841 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
11 Hb_000110_350 0.0939844757 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
12 Hb_000649_250 0.0943607667 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
13 Hb_006615_030 0.0944763666 - - prolyl oligopeptidase family protein [Populus trichocarpa]
14 Hb_002248_120 0.0969510141 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
15 Hb_060094_010 0.0971456463 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
16 Hb_007416_260 0.0978061518 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
17 Hb_008642_060 0.0978484845 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
18 Hb_005288_140 0.0989069679 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
19 Hb_000300_030 0.0998302936 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
20 Hb_004718_060 0.1031383538 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003540_250 Hb_003540_250 Hb_000815_310 Hb_000815_310 Hb_003540_250--Hb_000815_310 Hb_005305_100 Hb_005305_100 Hb_003540_250--Hb_005305_100 Hb_033152_090 Hb_033152_090 Hb_003540_250--Hb_033152_090 Hb_000956_040 Hb_000956_040 Hb_003540_250--Hb_000956_040 Hb_000179_190 Hb_000179_190 Hb_003540_250--Hb_000179_190 Hb_002248_130 Hb_002248_130 Hb_003540_250--Hb_002248_130 Hb_003777_130 Hb_003777_130 Hb_000815_310--Hb_003777_130 Hb_000815_310--Hb_033152_090 Hb_002965_050 Hb_002965_050 Hb_000815_310--Hb_002965_050 Hb_007416_260 Hb_007416_260 Hb_000815_310--Hb_007416_260 Hb_002876_210 Hb_002876_210 Hb_000815_310--Hb_002876_210 Hb_005305_100--Hb_000956_040 Hb_000300_030 Hb_000300_030 Hb_005305_100--Hb_000300_030 Hb_000172_360 Hb_000172_360 Hb_005305_100--Hb_000172_360 Hb_008165_020 Hb_008165_020 Hb_005305_100--Hb_008165_020 Hb_005305_100--Hb_000179_190 Hb_000110_350 Hb_000110_350 Hb_005305_100--Hb_000110_350 Hb_000640_190 Hb_000640_190 Hb_033152_090--Hb_000640_190 Hb_000258_420 Hb_000258_420 Hb_033152_090--Hb_000258_420 Hb_001009_120 Hb_001009_120 Hb_033152_090--Hb_001009_120 Hb_033152_090--Hb_000956_040 Hb_033152_090--Hb_003777_130 Hb_000034_110 Hb_000034_110 Hb_000956_040--Hb_000034_110 Hb_000956_040--Hb_001009_120 Hb_010287_020 Hb_010287_020 Hb_000956_040--Hb_010287_020 Hb_004774_090 Hb_004774_090 Hb_000956_040--Hb_004774_090 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_006615_030 Hb_006615_030 Hb_002248_130--Hb_006615_030 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_002248_130--Hb_000179_190 Hb_002248_130--Hb_017214_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1515 45.9621 37.8359 31.5389 9.95738 17.5791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2872 9.84818 9.91349 15.1331 28.4393

CAGE analysis