Hb_003544_020

Information

Type -
Description -
Location Contig3544: 8559-11471
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05560g
description POPTRDRAFT_569847; hypothetical protein
nr
ID XP_012070201.1
description PREDICTED: elongin-A [Jatropha curcas]
swissprot
ID O59671
description Elongin-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof4 PE=1 SV=3
trembl
ID A0A067L5N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03941 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription elongation factor b polypeptide 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36732: 2142-8134 , PASA_asmbl_36733: 9214-11467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_020 0.0 - - PREDICTED: elongin-A [Jatropha curcas]
2 Hb_005773_060 0.069995471 - - defender against cell death, putative [Ricinus communis]
3 Hb_001221_320 0.0790438806 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
4 Hb_000186_190 0.0815470156 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
5 Hb_002811_260 0.0908668158 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
6 Hb_008686_080 0.0910458168 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
7 Hb_001814_070 0.0958940011 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
8 Hb_003878_010 0.097227272 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
9 Hb_002601_110 0.0973535026 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
10 Hb_000562_030 0.0988545061 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007875_030 0.0997048461 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
12 Hb_000331_250 0.1043566343 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
13 Hb_001124_090 0.1059610359 - - acyl carrier protein, putative [Ricinus communis]
14 Hb_001416_010 0.1070684152 - - Thioredoxin H-type, putative [Ricinus communis]
15 Hb_001454_400 0.1094971095 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
16 Hb_002045_040 0.1101192507 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
17 Hb_002820_110 0.1119960725 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
18 Hb_128048_010 0.1138522654 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
19 Hb_033594_110 0.1142549728 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
20 Hb_002289_120 0.1146874212 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_020 Hb_003544_020 Hb_005773_060 Hb_005773_060 Hb_003544_020--Hb_005773_060 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_000186_190 Hb_000186_190 Hb_003544_020--Hb_000186_190 Hb_002811_260 Hb_002811_260 Hb_003544_020--Hb_002811_260 Hb_008686_080 Hb_008686_080 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_005773_060--Hb_002811_260 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_002349_040 Hb_002349_040 Hb_001221_320--Hb_002349_040 Hb_001221_320--Hb_002811_260 Hb_001221_320--Hb_005773_060 Hb_001221_320--Hb_008686_080 Hb_001454_400 Hb_001454_400 Hb_001221_320--Hb_001454_400 Hb_002289_120 Hb_002289_120 Hb_000186_190--Hb_002289_120 Hb_003878_010 Hb_003878_010 Hb_000186_190--Hb_003878_010 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_008686_080--Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_008686_080--Hb_001662_070 Hb_000805_120 Hb_000805_120 Hb_008686_080--Hb_000805_120 Hb_001814_070--Hb_002289_120 Hb_001814_070--Hb_003878_010 Hb_001814_070--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_001814_070--Hb_007875_030 Hb_001016_030 Hb_001016_030 Hb_001814_070--Hb_001016_030 Hb_019249_010 Hb_019249_010 Hb_001814_070--Hb_019249_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73342 3.23818 11.8242 9.38277 7.98517 9.31974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2867 14.526 5.27238 5.42939 2.1253

CAGE analysis