Hb_003544_030

Information

Type -
Description -
Location Contig3544: 12138-21476
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09070g
description POPTRDRAFT_735490; Citrate synthase family protein
nr
ID XP_012084988.1
description PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
swissprot
ID P49299
description Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1
trembl
ID A0A067K586
description Citrate synthase OS=Jatropha curcas GN=JCGZ_22095 PE=3 SV=1
Gene Ontology
ID GO:0046912
description citrate glyoxysomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36734: 12108-21419 , PASA_asmbl_36735: 16826-17018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_030 0.0 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
2 Hb_000327_250 0.0410077085 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
3 Hb_005663_110 0.0520713538 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
4 Hb_001434_080 0.0592862699 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_016347_010 0.0731706792 - - protein transporter, putative [Ricinus communis]
6 Hb_006452_120 0.0742673529 - - PREDICTED: protein FAM188A [Jatropha curcas]
7 Hb_017387_010 0.0755322293 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
8 Hb_001157_200 0.0760625334 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
9 Hb_007747_080 0.0761207693 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003776_060 0.076363069 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
11 Hb_002456_010 0.0777203821 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
12 Hb_001221_430 0.0804416209 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
13 Hb_000836_460 0.0806794292 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
14 Hb_000614_240 0.0806906075 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
15 Hb_000984_170 0.0811962691 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_003020_100 0.0827090572 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
17 Hb_001500_100 0.083616358 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004677_050 0.0852861885 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
19 Hb_011016_050 0.0853328862 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
20 Hb_002982_020 0.0853399465 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_030 Hb_003544_030 Hb_000327_250 Hb_000327_250 Hb_003544_030--Hb_000327_250 Hb_005663_110 Hb_005663_110 Hb_003544_030--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_003544_030--Hb_001434_080 Hb_016347_010 Hb_016347_010 Hb_003544_030--Hb_016347_010 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_000327_250--Hb_016347_010 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_000327_250--Hb_001434_080 Hb_005663_110--Hb_001434_080 Hb_004677_050 Hb_004677_050 Hb_005663_110--Hb_004677_050 Hb_000984_170 Hb_000984_170 Hb_005663_110--Hb_000984_170 Hb_039946_050 Hb_039946_050 Hb_005663_110--Hb_039946_050 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_016347_010--Hb_021576_010 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_017387_010--Hb_006452_120 Hb_001221_430 Hb_001221_430 Hb_017387_010--Hb_001221_430 Hb_017387_010--Hb_000574_450 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9958 21.0918 13.691 28.1723 13.4863 13.0304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7466 15.3457 17.1484 33.651 15.2311

CAGE analysis