Hb_003544_050

Information

Type -
Description -
Location Contig3544: 28332-33455
Sequence    

Annotation

kegg
ID rcu:RCOM_1195270
description hypothetical protein
nr
ID XP_012084990.1
description PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A0A067JSW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22098 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36736: 27941-32043 , PASA_asmbl_36737: 27941-32043 , PASA_asmbl_36738: 32229-32695 , PASA_asmbl_36739: 32246-32385 , PASA_asmbl_36740: 33997-48215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_050 0.0 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
2 Hb_000140_210 0.0452924615 - - sec10, putative [Ricinus communis]
3 Hb_000809_230 0.049870718 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
4 Hb_001377_350 0.05920524 - - PREDICTED: exportin-2 [Jatropha curcas]
5 Hb_009296_040 0.0663698781 - - hypothetical protein L484_007435 [Morus notabilis]
6 Hb_002749_060 0.0667601248 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
7 Hb_004679_030 0.0684246981 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
8 Hb_103684_010 0.0685465182 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
9 Hb_000984_170 0.0707408535 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
10 Hb_004030_080 0.0726973582 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
11 Hb_004677_050 0.0733451307 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
12 Hb_001500_100 0.0761095206 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000537_050 0.0763543937 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
14 Hb_000358_050 0.0770889837 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
15 Hb_011016_050 0.0779685639 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
16 Hb_004019_120 0.0783183433 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
17 Hb_012286_040 0.0789412538 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
18 Hb_000261_480 0.0804145457 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
19 Hb_012114_100 0.0811844501 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_002890_130 0.0813484068 - - tip120, putative [Ricinus communis]

Gene co-expression network

sample Hb_003544_050 Hb_003544_050 Hb_000140_210 Hb_000140_210 Hb_003544_050--Hb_000140_210 Hb_000809_230 Hb_000809_230 Hb_003544_050--Hb_000809_230 Hb_001377_350 Hb_001377_350 Hb_003544_050--Hb_001377_350 Hb_009296_040 Hb_009296_040 Hb_003544_050--Hb_009296_040 Hb_002749_060 Hb_002749_060 Hb_003544_050--Hb_002749_060 Hb_004679_030 Hb_004679_030 Hb_003544_050--Hb_004679_030 Hb_000140_210--Hb_009296_040 Hb_011016_050 Hb_011016_050 Hb_000140_210--Hb_011016_050 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_085781_020 Hb_085781_020 Hb_000140_210--Hb_085781_020 Hb_000028_390 Hb_000028_390 Hb_000140_210--Hb_000028_390 Hb_000809_230--Hb_004679_030 Hb_000809_230--Hb_001377_350 Hb_000809_230--Hb_002749_060 Hb_007994_010 Hb_007994_010 Hb_000809_230--Hb_007994_010 Hb_000809_230--Hb_009296_040 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_004679_030--Hb_009296_040 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19785 5.83953 3.72831 7.89829 2.99121 6.33051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16196 3.31219 5.73802 7.87943 7.38574

CAGE analysis