Hb_003544_080

Information

Type -
Description -
Location Contig3544: 60438-61325
Sequence    

Annotation

kegg
ID rcu:RCOM_1192930
description Protein HVA22, putative
nr
ID XP_002520378.1
description Protein HVA22, putative [Ricinus communis]
swissprot
ID Q682H0
description HVA22-like protein f OS=Arabidopsis thaliana GN=HVA22F PE=2 SV=1
trembl
ID B9S309
description HVA22-like protein OS=Ricinus communis GN=RCOM_1192930 PE=3 SV=1
Gene Ontology
ID GO:0016021
description hva22-like protein f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36750: 60160-60598 , PASA_asmbl_36751: 62240-63584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_080 0.0 - - Protein HVA22, putative [Ricinus communis]
2 Hb_006153_140 0.1069399571 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
3 Hb_002783_100 0.1100452762 - - Zeamatin precursor, putative [Ricinus communis]
4 Hb_000317_380 0.1183340259 - - Peroxidase 47 precursor, putative [Ricinus communis]
5 Hb_003680_240 0.1191220676 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
6 Hb_002686_220 0.1219681853 - - PREDICTED: expansin-A15-like [Jatropha curcas]
7 Hb_002067_070 0.1223452271 - - hypothetical protein JCGZ_19254 [Jatropha curcas]
8 Hb_009151_010 0.1248651391 - - Peroxidase 3 [Morus notabilis]
9 Hb_005116_150 0.1321081144 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
10 Hb_001818_010 0.1329583168 - - Disease resistance response protein, putative [Ricinus communis]
11 Hb_051212_020 0.1330999939 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
12 Hb_003894_050 0.1342731466 - - hypothetical protein JCGZ_14524 [Jatropha curcas]
13 Hb_140627_040 0.134440104 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
14 Hb_015292_020 0.1346588216 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_000866_130 0.1351113019 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
16 Hb_009079_020 0.1351959375 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
17 Hb_006088_020 0.1373137774 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_015175_070 0.1379295117 - - cysteine protease, putative [Ricinus communis]
19 Hb_058471_020 0.13797675 - - PREDICTED: expansin-B3-like [Jatropha curcas]
20 Hb_028514_010 0.1390070337 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_080 Hb_003544_080 Hb_006153_140 Hb_006153_140 Hb_003544_080--Hb_006153_140 Hb_002783_100 Hb_002783_100 Hb_003544_080--Hb_002783_100 Hb_000317_380 Hb_000317_380 Hb_003544_080--Hb_000317_380 Hb_003680_240 Hb_003680_240 Hb_003544_080--Hb_003680_240 Hb_002686_220 Hb_002686_220 Hb_003544_080--Hb_002686_220 Hb_002067_070 Hb_002067_070 Hb_003544_080--Hb_002067_070 Hb_009079_020 Hb_009079_020 Hb_006153_140--Hb_009079_020 Hb_006153_140--Hb_002686_220 Hb_001818_010 Hb_001818_010 Hb_006153_140--Hb_001818_010 Hb_112950_010 Hb_112950_010 Hb_006153_140--Hb_112950_010 Hb_000866_130 Hb_000866_130 Hb_006153_140--Hb_000866_130 Hb_015175_070 Hb_015175_070 Hb_006153_140--Hb_015175_070 Hb_002783_100--Hb_000317_380 Hb_000005_290 Hb_000005_290 Hb_002783_100--Hb_000005_290 Hb_001975_110 Hb_001975_110 Hb_002783_100--Hb_001975_110 Hb_050898_040 Hb_050898_040 Hb_002783_100--Hb_050898_040 Hb_002309_020 Hb_002309_020 Hb_002783_100--Hb_002309_020 Hb_004162_200 Hb_004162_200 Hb_002783_100--Hb_004162_200 Hb_002092_060 Hb_002092_060 Hb_000317_380--Hb_002092_060 Hb_000317_380--Hb_001975_110 Hb_000317_380--Hb_002309_020 Hb_000317_380--Hb_015175_070 Hb_000317_380--Hb_000005_290 Hb_003680_240--Hb_002686_220 Hb_003598_050 Hb_003598_050 Hb_003680_240--Hb_003598_050 Hb_003680_240--Hb_006153_140 Hb_000331_630 Hb_000331_630 Hb_003680_240--Hb_000331_630 Hb_140627_040 Hb_140627_040 Hb_003680_240--Hb_140627_040 Hb_017061_010 Hb_017061_010 Hb_003680_240--Hb_017061_010 Hb_002686_220--Hb_112950_010 Hb_002686_220--Hb_003598_050 Hb_002686_220--Hb_009079_020 Hb_006573_120 Hb_006573_120 Hb_002686_220--Hb_006573_120 Hb_002686_220--Hb_015175_070 Hb_002067_070--Hb_004162_200 Hb_009151_010 Hb_009151_010 Hb_002067_070--Hb_009151_010 Hb_005295_030 Hb_005295_030 Hb_002067_070--Hb_005295_030 Hb_000680_100 Hb_000680_100 Hb_002067_070--Hb_000680_100 Hb_002311_030 Hb_002311_030 Hb_002067_070--Hb_002311_030 Hb_002067_070--Hb_050898_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0737509 0.334241 2.56901 10.922 0 0.181071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174104 0 0 0.231499 2.21326

CAGE analysis