Hb_003544_090

Information

Type -
Description -
Location Contig3544: 62061-63466
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14710g
description transducin family protein
nr
ID XP_010272547.1
description PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
swissprot
ID Q9LXN4
description Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2
trembl
ID A0A067F3I8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036101mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36751: 62240-63584 , PASA_asmbl_36752: 62983-64145 , PASA_asmbl_36753: 64381-64608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_090 0.0 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
2 Hb_000209_090 0.0893492394 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_000003_090 0.0912794414 - - -
4 Hb_010128_130 0.0934195316 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
5 Hb_001741_140 0.0949318211 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_006816_500 0.0974766706 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
7 Hb_004204_200 0.0977787049 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
8 Hb_000976_270 0.0999485055 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
9 Hb_171900_100 0.1002326155 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
10 Hb_004044_020 0.1036438731 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
11 Hb_004525_100 0.1050074216 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
12 Hb_004449_220 0.1055673473 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
13 Hb_000529_080 0.1055789149 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
14 Hb_001766_150 0.105799845 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
15 Hb_012675_090 0.1064604453 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
16 Hb_000088_200 0.108290293 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_001504_070 0.1091079958 - - PREDICTED: 60S ribosomal protein L7-1 [Jatropha curcas]
18 Hb_003044_100 0.1101475305 - - hypothetical protein F383_08446 [Gossypium arboreum]
19 Hb_000058_040 0.1103598048 - - PREDICTED: probable lipid-A-disaccharide synthase, mitochondrial [Jatropha curcas]
20 Hb_006637_060 0.1111919017 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_090 Hb_003544_090 Hb_000209_090 Hb_000209_090 Hb_003544_090--Hb_000209_090 Hb_000003_090 Hb_000003_090 Hb_003544_090--Hb_000003_090 Hb_010128_130 Hb_010128_130 Hb_003544_090--Hb_010128_130 Hb_001741_140 Hb_001741_140 Hb_003544_090--Hb_001741_140 Hb_006816_500 Hb_006816_500 Hb_003544_090--Hb_006816_500 Hb_004204_200 Hb_004204_200 Hb_003544_090--Hb_004204_200 Hb_000976_270 Hb_000976_270 Hb_000209_090--Hb_000976_270 Hb_003605_070 Hb_003605_070 Hb_000209_090--Hb_003605_070 Hb_000209_090--Hb_001741_140 Hb_007534_040 Hb_007534_040 Hb_000209_090--Hb_007534_040 Hb_004044_020 Hb_004044_020 Hb_000209_090--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000209_090--Hb_004525_100 Hb_000003_090--Hb_001741_140 Hb_000176_110 Hb_000176_110 Hb_000003_090--Hb_000176_110 Hb_006637_060 Hb_006637_060 Hb_000003_090--Hb_006637_060 Hb_000003_090--Hb_010128_130 Hb_001221_230 Hb_001221_230 Hb_000003_090--Hb_001221_230 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_010128_130--Hb_001221_230 Hb_009767_120 Hb_009767_120 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_002997_170 Hb_002997_170 Hb_001741_140--Hb_002997_170 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_000997_020 Hb_000997_020 Hb_001741_140--Hb_000997_020 Hb_000905_190 Hb_000905_190 Hb_001741_140--Hb_000905_190 Hb_001741_140--Hb_000107_050 Hb_000002_330 Hb_000002_330 Hb_006816_500--Hb_000002_330 Hb_000141_060 Hb_000141_060 Hb_006816_500--Hb_000141_060 Hb_143766_090 Hb_143766_090 Hb_006816_500--Hb_143766_090 Hb_006816_500--Hb_010128_130 Hb_000322_050 Hb_000322_050 Hb_006816_500--Hb_000322_050 Hb_000749_150 Hb_000749_150 Hb_004204_200--Hb_000749_150 Hb_004204_200--Hb_001741_140 Hb_004204_200--Hb_010128_130 Hb_004204_200--Hb_001221_230 Hb_004204_200--Hb_000905_190 Hb_000349_060 Hb_000349_060 Hb_004204_200--Hb_000349_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10347 1.33463 2.17773 1.39937 5.90893 8.46395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60451 5.55389 1.46298 2.31778 1.61796

CAGE analysis