Hb_003544_100

Information

Type -
Description -
Location Contig3544: 64270-66996
Sequence    

Annotation

kegg
ID tcc:TCM_041888
description Pentatricopeptide repeat (PPR) superfamily protein
nr
ID XP_012064995.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
swissprot
ID Q9FJE6
description Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
trembl
ID A0A061H039
description Pentatricopeptide repeat (PPR) superfamily protein OS=Theobroma cacao GN=TCM_041888 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g59900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36753: 64381-64608 , PASA_asmbl_36754: 64610-64892 , PASA_asmbl_36756: 65489-65802 , PASA_asmbl_36758: 66516-66972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_100 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
2 Hb_009411_010 0.0471648807 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
3 Hb_001599_030 0.0595123584 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
4 Hb_003938_080 0.0677040897 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
5 Hb_006915_060 0.0717656625 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
6 Hb_000320_200 0.0743990763 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
7 Hb_003216_080 0.0745896978 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
8 Hb_001322_210 0.0753385158 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
9 Hb_015884_030 0.0753970151 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
10 Hb_010381_060 0.0776072648 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
11 Hb_126643_010 0.0778668204 - - Protein transport protein Sec24C, putative [Ricinus communis]
12 Hb_000010_180 0.0781459574 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
13 Hb_048476_180 0.0781618463 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
14 Hb_006449_050 0.0799453127 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
15 Hb_000768_190 0.0801044549 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
16 Hb_003966_030 0.0804440964 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
17 Hb_003052_150 0.0805851676 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
18 Hb_000714_050 0.0809461297 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
19 Hb_002255_050 0.0822886651 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_000101_240 0.0831288395 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003544_100 Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003938_080 Hb_003938_080 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_001599_030--Hb_000320_200 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_001599_030--Hb_009411_010 Hb_003938_080--Hb_003216_080 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_003938_080--Hb_000502_050 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_003847_120 Hb_003847_120 Hb_006915_060--Hb_003847_120 Hb_000010_180 Hb_000010_180 Hb_006915_060--Hb_000010_180 Hb_006915_060--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000714_050 Hb_000714_050 Hb_000320_200--Hb_000714_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_001930_010 Hb_001930_010 Hb_003216_080--Hb_001930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61597 1.6459 1.11511 0.863357 3.08845 3.72463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1419 1.06309 1.9818 1.64241 1.80579

CAGE analysis