Hb_003544_140

Information

Type -
Description -
Location Contig3544: 93735-104327
Sequence    

Annotation

kegg
ID rcu:RCOM_1717970
description ganglioside induced differentiation associated protein, putative
nr
ID XP_012067735.1
description PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
swissprot
ID A7T167
description Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1
trembl
ID A0A067L246
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15675 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36761: 100883-102452 , PASA_asmbl_36762: 95518-118277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_140 0.0 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
2 Hb_012760_100 0.0775805153 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
3 Hb_011228_010 0.077651288 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_007994_010 0.0806542164 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
5 Hb_004182_050 0.0807802409 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
6 Hb_002849_100 0.0810400662 - - PREDICTED: mechanosensitive ion channel protein 1, mitochondrial [Jatropha curcas]
7 Hb_000035_170 0.0812844416 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
8 Hb_001498_010 0.081684186 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
9 Hb_000005_190 0.0826856834 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
10 Hb_007426_110 0.0830436218 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
11 Hb_010710_070 0.0833811926 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
12 Hb_020378_030 0.0835439604 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
13 Hb_000592_030 0.0837106041 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
14 Hb_004003_040 0.0858081024 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_003544_160 0.0862692743 - - -
16 Hb_003020_030 0.0866691133 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
17 Hb_001449_040 0.0869554099 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_028912_050 0.0869770647 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
19 Hb_008484_060 0.0877810942 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
20 Hb_001279_030 0.0879099341 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_003544_140 Hb_003544_140 Hb_012760_100 Hb_012760_100 Hb_003544_140--Hb_012760_100 Hb_011228_010 Hb_011228_010 Hb_003544_140--Hb_011228_010 Hb_007994_010 Hb_007994_010 Hb_003544_140--Hb_007994_010 Hb_004182_050 Hb_004182_050 Hb_003544_140--Hb_004182_050 Hb_002849_100 Hb_002849_100 Hb_003544_140--Hb_002849_100 Hb_000035_170 Hb_000035_170 Hb_003544_140--Hb_000035_170 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_012760_100--Hb_004182_050 Hb_056691_060 Hb_056691_060 Hb_012760_100--Hb_056691_060 Hb_012760_100--Hb_007994_010 Hb_003734_010 Hb_003734_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_135572_010 Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_004143_160 Hb_004143_160 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_001814_030 Hb_001814_030 Hb_004182_050--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_004182_050--Hb_012395_140 Hb_001550_060 Hb_001550_060 Hb_004182_050--Hb_001550_060 Hb_000174_270 Hb_000174_270 Hb_004182_050--Hb_000174_270 Hb_000412_010 Hb_000412_010 Hb_004182_050--Hb_000412_010 Hb_188063_020 Hb_188063_020 Hb_002849_100--Hb_188063_020 Hb_010710_070 Hb_010710_070 Hb_002849_100--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_002849_100--Hb_004963_030 Hb_004225_050 Hb_004225_050 Hb_002849_100--Hb_004225_050 Hb_000343_250 Hb_000343_250 Hb_002849_100--Hb_000343_250 Hb_002496_010 Hb_002496_010 Hb_002849_100--Hb_002496_010 Hb_006501_090 Hb_006501_090 Hb_000035_170--Hb_006501_090 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_003645_060 Hb_003645_060 Hb_000035_170--Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_000035_170--Hb_000563_130 Hb_001655_030 Hb_001655_030 Hb_000035_170--Hb_001655_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95848 6.34518 5.33917 6.60285 7.87278 10.2144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28925 3.46353 7.24929 8.07844 12.0045

CAGE analysis