Hb_003544_160

Information

Type -
Description -
Location Contig3544: 112794-118029
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36762: 95518-118277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_160 0.0 - - -
2 Hb_002414_050 0.0536193227 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
3 Hb_004679_030 0.0615834616 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
4 Hb_002768_060 0.0659297902 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
5 Hb_001662_100 0.0673115758 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
6 Hb_001876_010 0.0702644376 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
7 Hb_000359_210 0.0705103177 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000656_010 0.0754015532 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
9 Hb_000789_200 0.0781584933 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
10 Hb_000809_230 0.0782390019 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
11 Hb_013726_090 0.0790338204 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
12 Hb_009569_040 0.080311765 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
13 Hb_000521_250 0.0805623831 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
14 Hb_002897_090 0.082002122 - - conserved hypothetical protein [Ricinus communis]
15 Hb_122968_010 0.0822026929 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
16 Hb_000720_050 0.0840470665 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
17 Hb_000270_390 0.0844218366 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
18 Hb_000022_020 0.0850542411 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
19 Hb_000429_150 0.0859183273 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
20 Hb_003544_140 0.0862692743 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_160 Hb_003544_160 Hb_002414_050 Hb_002414_050 Hb_003544_160--Hb_002414_050 Hb_004679_030 Hb_004679_030 Hb_003544_160--Hb_004679_030 Hb_002768_060 Hb_002768_060 Hb_003544_160--Hb_002768_060 Hb_001662_100 Hb_001662_100 Hb_003544_160--Hb_001662_100 Hb_001876_010 Hb_001876_010 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_002414_050--Hb_001662_100 Hb_000022_020 Hb_000022_020 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_004452_110 Hb_004452_110 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_002768_060--Hb_001876_010 Hb_004480_100 Hb_004480_100 Hb_002768_060--Hb_004480_100 Hb_000789_200 Hb_000789_200 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_002768_060--Hb_004679_030 Hb_009569_040 Hb_009569_040 Hb_001662_100--Hb_009569_040 Hb_002883_030 Hb_002883_030 Hb_001662_100--Hb_002883_030 Hb_000787_160 Hb_000787_160 Hb_001662_100--Hb_000787_160 Hb_003878_150 Hb_003878_150 Hb_001662_100--Hb_003878_150 Hb_000011_060 Hb_000011_060 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_000359_210--Hb_004679_030 Hb_003206_110 Hb_003206_110 Hb_000359_210--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8367 2.47915 2.13717 4.23715 2.3347 3.80277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94168 1.97075 2.59201 3.64062 5.49788

CAGE analysis