Hb_003544_180

Information

Type -
Description -
Location Contig3544: 123844-131051
Sequence    

Annotation

kegg
ID rcu:RCOM_1621800
description hypothetical protein
nr
ID XP_012067729.1
description PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15671 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36764: 126020-127027 , PASA_asmbl_36765: 127300-130932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_180 0.0 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
2 Hb_005699_090 0.0835566401 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
3 Hb_007416_160 0.0927797549 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
4 Hb_001439_140 0.0951244813 - - pattern formation protein, putative [Ricinus communis]
5 Hb_000890_050 0.1044749753 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
6 Hb_004143_130 0.1059788306 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
7 Hb_004156_050 0.1068053984 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
8 Hb_000796_040 0.1076312683 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_004225_050 0.110160023 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
10 Hb_000229_030 0.1132790301 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
11 Hb_004545_140 0.1139192722 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
12 Hb_001007_060 0.1147832695 - - Transcriptional corepressor SEUSS [Glycine soja]
13 Hb_001205_230 0.1153621146 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
14 Hb_000803_260 0.1168750001 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
15 Hb_002740_110 0.1171231909 - - PREDICTED: phytochrome A [Jatropha curcas]
16 Hb_005901_020 0.1182797297 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
17 Hb_003253_040 0.1193079128 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
18 Hb_004032_380 0.1198408891 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
19 Hb_000009_600 0.1201034423 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
20 Hb_002942_100 0.1202601697 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003544_180 Hb_003544_180 Hb_005699_090 Hb_005699_090 Hb_003544_180--Hb_005699_090 Hb_007416_160 Hb_007416_160 Hb_003544_180--Hb_007416_160 Hb_001439_140 Hb_001439_140 Hb_003544_180--Hb_001439_140 Hb_000890_050 Hb_000890_050 Hb_003544_180--Hb_000890_050 Hb_004143_130 Hb_004143_130 Hb_003544_180--Hb_004143_130 Hb_004156_050 Hb_004156_050 Hb_003544_180--Hb_004156_050 Hb_000035_290 Hb_000035_290 Hb_005699_090--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_005699_090--Hb_001268_350 Hb_000563_640 Hb_000563_640 Hb_005699_090--Hb_000563_640 Hb_002784_110 Hb_002784_110 Hb_005699_090--Hb_002784_110 Hb_025194_040 Hb_025194_040 Hb_005699_090--Hb_025194_040 Hb_000796_040 Hb_000796_040 Hb_007416_160--Hb_000796_040 Hb_000031_170 Hb_000031_170 Hb_007416_160--Hb_000031_170 Hb_012799_030 Hb_012799_030 Hb_007416_160--Hb_012799_030 Hb_001205_230 Hb_001205_230 Hb_007416_160--Hb_001205_230 Hb_000034_040 Hb_000034_040 Hb_007416_160--Hb_000034_040 Hb_003440_050 Hb_003440_050 Hb_007416_160--Hb_003440_050 Hb_000313_060 Hb_000313_060 Hb_001439_140--Hb_000313_060 Hb_007586_030 Hb_007586_030 Hb_001439_140--Hb_007586_030 Hb_001930_010 Hb_001930_010 Hb_001439_140--Hb_001930_010 Hb_000193_310 Hb_000193_310 Hb_001439_140--Hb_000193_310 Hb_010417_050 Hb_010417_050 Hb_001439_140--Hb_010417_050 Hb_014267_010 Hb_014267_010 Hb_001439_140--Hb_014267_010 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_001227_060 Hb_001227_060 Hb_004156_050--Hb_001227_060 Hb_000340_230 Hb_000340_230 Hb_004156_050--Hb_000340_230 Hb_000665_060 Hb_000665_060 Hb_004156_050--Hb_000665_060 Hb_172632_080 Hb_172632_080 Hb_004156_050--Hb_172632_080 Hb_001198_100 Hb_001198_100 Hb_004156_050--Hb_001198_100 Hb_004225_050 Hb_004225_050 Hb_004156_050--Hb_004225_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.78138 6.88365 1.60691 4.26475 8.15337 6.32988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.24024 2.98521 9.51406 5.39195 8.29074

CAGE analysis