Hb_003549_020

Information

Type -
Description -
Location Contig3549: 31596-33307
Sequence    

Annotation

kegg
ID rcu:RCOM_1435520
description hypothetical protein
nr
ID XP_002512526.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36767: 31624-33318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000236_460 0.0757297289 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
3 Hb_000645_190 0.0788520241 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
4 Hb_097007_010 0.0886922541 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
5 Hb_002320_060 0.0961213983 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
6 Hb_004007_180 0.0980335561 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
7 Hb_007497_030 0.0997953699 - - mutt domain protein, putative [Ricinus communis]
8 Hb_000258_280 0.1013366264 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
9 Hb_000085_330 0.1021304499 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
10 Hb_000172_420 0.1043380685 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_000805_130 0.1051537385 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009384_020 0.1058249737 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
13 Hb_012395_130 0.1069280851 - - Os02g0814700 [Oryza sativa Japonica Group]
14 Hb_026398_010 0.1071571948 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
15 Hb_001780_050 0.1091904674 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
16 Hb_004754_070 0.109934886 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
17 Hb_000163_130 0.111125636 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
18 Hb_004735_050 0.1137440519 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_172221_010 0.1147693458 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
20 Hb_002835_320 0.1152298835 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_003549_020 Hb_003549_020 Hb_000236_460 Hb_000236_460 Hb_003549_020--Hb_000236_460 Hb_000645_190 Hb_000645_190 Hb_003549_020--Hb_000645_190 Hb_097007_010 Hb_097007_010 Hb_003549_020--Hb_097007_010 Hb_002320_060 Hb_002320_060 Hb_003549_020--Hb_002320_060 Hb_004007_180 Hb_004007_180 Hb_003549_020--Hb_004007_180 Hb_007497_030 Hb_007497_030 Hb_003549_020--Hb_007497_030 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_001769_100 Hb_001769_100 Hb_000645_190--Hb_001769_100 Hb_000645_190--Hb_000085_330 Hb_000134_020 Hb_000134_020 Hb_000645_190--Hb_000134_020 Hb_000645_190--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000645_190--Hb_003058_220 Hb_097007_010--Hb_002320_060 Hb_026398_010 Hb_026398_010 Hb_097007_010--Hb_026398_010 Hb_011311_010 Hb_011311_010 Hb_097007_010--Hb_011311_010 Hb_097007_010--Hb_000085_330 Hb_002320_060--Hb_000236_460 Hb_002320_060--Hb_187083_010 Hb_002320_060--Hb_000645_190 Hb_030565_040 Hb_030565_040 Hb_002320_060--Hb_030565_040 Hb_000270_720 Hb_000270_720 Hb_004007_180--Hb_000270_720 Hb_002316_120 Hb_002316_120 Hb_004007_180--Hb_002316_120 Hb_000599_280 Hb_000599_280 Hb_004007_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_004007_180--Hb_006588_080 Hb_000789_110 Hb_000789_110 Hb_004007_180--Hb_000789_110 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050 Hb_000331_700 Hb_000331_700 Hb_007497_030--Hb_000331_700 Hb_076626_010 Hb_076626_010 Hb_007497_030--Hb_076626_010 Hb_002909_130 Hb_002909_130 Hb_007497_030--Hb_002909_130 Hb_000258_280 Hb_000258_280 Hb_007497_030--Hb_000258_280 Hb_001863_400 Hb_001863_400 Hb_007497_030--Hb_001863_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.55167 2.67599 5.23601 8.95001 9.35588 21.5245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2213 86.4068 19.7226 9.0699 4.6986

CAGE analysis