Hb_003549_080

Information

Type -
Description -
Location Contig3549: 60479-65361
Sequence    

Annotation

kegg
ID vvi:100263083
description importin subunit alpha
nr
ID XP_012088870.1
description PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
swissprot
ID O80480
description Importin subunit alpha-4 OS=Arabidopsis thaliana GN=IMPA4 PE=1 SV=1
trembl
ID A0A067JHF4
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_23204 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_080 0.0 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
2 Hb_007441_080 0.1326172287 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
3 Hb_004965_110 0.1356183769 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
4 Hb_001904_050 0.1361356387 - - alpha-tubulin 1 [Hevea brasiliensis]
5 Hb_011671_260 0.1361573714 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
6 Hb_027506_040 0.1393494423 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
7 Hb_009111_020 0.1413620997 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
8 Hb_001277_100 0.1414441516 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
9 Hb_001014_060 0.1435775302 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
10 Hb_003119_060 0.1439986669 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
11 Hb_002205_140 0.1466091201 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
12 Hb_000926_080 0.1501013581 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
13 Hb_000122_190 0.15057013 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
14 Hb_007101_110 0.1516848357 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
15 Hb_007904_230 0.1522488089 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
16 Hb_000742_020 0.1529181057 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_000107_430 0.1535844495 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
18 Hb_000300_700 0.1536391723 - - PREDICTED: adenylyl-sulfate kinase 3 [Jatropha curcas]
19 Hb_000200_300 0.1537223621 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
20 Hb_002333_070 0.1539222087 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003549_080 Hb_003549_080 Hb_007441_080 Hb_007441_080 Hb_003549_080--Hb_007441_080 Hb_004965_110 Hb_004965_110 Hb_003549_080--Hb_004965_110 Hb_001904_050 Hb_001904_050 Hb_003549_080--Hb_001904_050 Hb_011671_260 Hb_011671_260 Hb_003549_080--Hb_011671_260 Hb_027506_040 Hb_027506_040 Hb_003549_080--Hb_027506_040 Hb_009111_020 Hb_009111_020 Hb_003549_080--Hb_009111_020 Hb_002110_100 Hb_002110_100 Hb_007441_080--Hb_002110_100 Hb_000742_020 Hb_000742_020 Hb_007441_080--Hb_000742_020 Hb_000684_030 Hb_000684_030 Hb_007441_080--Hb_000684_030 Hb_003602_060 Hb_003602_060 Hb_007441_080--Hb_003602_060 Hb_000590_120 Hb_000590_120 Hb_007441_080--Hb_000590_120 Hb_003875_030 Hb_003875_030 Hb_007441_080--Hb_003875_030 Hb_003266_030 Hb_003266_030 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_004965_110--Hb_011671_260 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_031527_110 Hb_031527_110 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_011671_260--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_027506_040--Hb_003602_060 Hb_027506_040--Hb_000684_030 Hb_000300_700 Hb_000300_700 Hb_009111_020--Hb_000300_700 Hb_002333_070 Hb_002333_070 Hb_009111_020--Hb_002333_070 Hb_000122_190 Hb_000122_190 Hb_009111_020--Hb_000122_190 Hb_000256_040 Hb_000256_040 Hb_009111_020--Hb_000256_040 Hb_001486_010 Hb_001486_010 Hb_009111_020--Hb_001486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.881084 0.718433 3.2367 2.68597 0.750919 0.165673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00148 1.54175 2.2759 0.78352 2.35541

CAGE analysis