Hb_003549_090

Information

Type -
Description -
Location Contig3549: 73250-76382
Sequence    

Annotation

kegg
ID cit:102629549
description rhodanese-like domain-containing protein 6-like
nr
ID XP_012088867.1
description PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
swissprot
ID Q94AC1
description Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana GN=STR6 PE=2 SV=1
trembl
ID A0A067JTP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23203 PE=4 SV=1
Gene Ontology
ID GO:0016787
description rhodanese-like domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36773: 73552-74151 , PASA_asmbl_36774: 74217-75349 , PASA_asmbl_36775: 75383-76330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_090 0.0 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
2 Hb_002398_030 0.0607202687 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_011310_130 0.0611532034 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
4 Hb_000777_050 0.061294323 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
5 Hb_000007_280 0.0614320082 - - hypothetical protein VITISV_000066 [Vitis vinifera]
6 Hb_011310_210 0.0666814938 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
7 Hb_058999_030 0.066961321 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
8 Hb_000933_010 0.0686750307 - - -
9 Hb_008120_030 0.0690500685 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
10 Hb_000648_100 0.0693512838 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_002942_050 0.0704631443 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
12 Hb_009296_010 0.0716688799 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
13 Hb_000101_380 0.0738949666 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
14 Hb_000470_070 0.0743213336 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
15 Hb_019654_040 0.0762674065 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
16 Hb_000152_260 0.0769044988 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
17 Hb_000208_210 0.0797279774 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
18 Hb_000208_260 0.0810418515 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
19 Hb_007062_020 0.0843700275 - - gcn4-complementing protein, putative [Ricinus communis]
20 Hb_008556_030 0.0849355301 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003549_090 Hb_003549_090 Hb_002398_030 Hb_002398_030 Hb_003549_090--Hb_002398_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_002942_050 Hb_002942_050 Hb_011310_130--Hb_002942_050 Hb_001635_040 Hb_001635_040 Hb_011310_130--Hb_001635_040 Hb_011310_130--Hb_000777_050 Hb_001163_120 Hb_001163_120 Hb_011310_130--Hb_001163_120 Hb_011310_130--Hb_011310_210 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_000777_050--Hb_011310_210 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_000777_050--Hb_001635_040 Hb_000777_050--Hb_002942_050 Hb_000101_380 Hb_000101_380 Hb_000007_280--Hb_000101_380 Hb_000915_080 Hb_000915_080 Hb_000007_280--Hb_000915_080 Hb_001005_030 Hb_001005_030 Hb_000007_280--Hb_001005_030 Hb_000007_280--Hb_011310_130 Hb_010272_010 Hb_010272_010 Hb_000007_280--Hb_010272_010 Hb_011310_210--Hb_008120_030 Hb_011310_210--Hb_002942_050 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.86909 4.51259 5.57677 5.78361 6.62458 9.70745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.38885 2.95829 3.42436 4.09944 3.52829

CAGE analysis