Hb_003549_150

Information

Type -
Description -
Location Contig3549: 124331-128531
Sequence    

Annotation

kegg
ID rcu:RCOM_1435740
description clathrin coat adaptor ap3 medium chain, putative
nr
ID XP_002512538.1
description clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
swissprot
ID F4I562
description AP-3 complex subunit mu OS=Arabidopsis thaliana GN=AP3M PE=1 SV=1
trembl
ID B9RFL9
description Clathrin coat adaptor ap3 medium chain, putative OS=Ricinus communis GN=RCOM_1435740 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-3 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36780: 124316-128496 , PASA_asmbl_36782: 129273-132366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003549_150 0.0 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
2 Hb_007416_300 0.0587313351 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
3 Hb_010381_090 0.0613547412 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
4 Hb_000603_150 0.0637241588 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
5 Hb_000617_100 0.0643777896 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
6 Hb_001051_080 0.064394181 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
7 Hb_001408_040 0.0711136884 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
8 Hb_000120_170 0.073587687 - - selenoprotein [Populus trichocarpa]
9 Hb_002872_030 0.074056075 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
10 Hb_158062_010 0.0741569977 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
11 Hb_028285_010 0.075042441 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
12 Hb_000020_150 0.0753930066 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
13 Hb_003528_010 0.07599212 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
14 Hb_000120_430 0.0763909491 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
15 Hb_014497_050 0.0775869148 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
16 Hb_000923_010 0.0787589213 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
17 Hb_001635_090 0.079051202 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
18 Hb_010712_030 0.0796005709 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003185_010 0.0798099466 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
20 Hb_143395_010 0.079837613 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]

Gene co-expression network

sample Hb_003549_150 Hb_003549_150 Hb_007416_300 Hb_007416_300 Hb_003549_150--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_007416_300--Hb_010381_090 Hb_007416_300--Hb_001051_080 Hb_002872_030 Hb_002872_030 Hb_007416_300--Hb_002872_030 Hb_033642_030 Hb_033642_030 Hb_007416_300--Hb_033642_030 Hb_008453_140 Hb_008453_140 Hb_007416_300--Hb_008453_140 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_001142_030 Hb_001142_030 Hb_010381_090--Hb_001142_030 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_007576_110 Hb_007576_110 Hb_000617_100--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_000617_100--Hb_014361_070 Hb_000683_070 Hb_000683_070 Hb_000617_100--Hb_000683_070 Hb_001195_560 Hb_001195_560 Hb_000617_100--Hb_001195_560 Hb_000617_100--Hb_001051_080 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_001408_040--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95301 8.45096 8.63687 10.5603 9.85867 10.2022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.74892 7.57614 7.26169 7.8773 3.53522

CAGE analysis